« Back to Triticum dicoccoides search


Detailed information on CNT30666221


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 1e-48

BLAST vs NONCODE:
NONSTUT000620, E-value = 5e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30253996Triticum dicoccoidesAvena sativa44.9431.2994.58240forward
CNT30686456Triticum dicoccoidesTriticum urartu46.8284.7596.4250forward

Expression of CNT30666221

Peptides detected in this lncRNA

>peptide 1 (49 aa)
EGCKGTIFNICRRKAKQRHNSMQESADKTRYGQERHKLRTILRAHLLII*

>peptide 2 (42 aa)
LKAAKAPFSIYAGERRNKGIIQCKNLQTKQGMGKNDTNYARY*

>peptide 3 (63 aa)
MTSHLLATTQAENQVEGGLLLDVVVSKGTTILELLASKDEALLVRGDALLVLDLRLDVVDGVR*

>peptide 4 (44 aa)
MRRCWSGGMPSLSWIFALTLSMVSDDSTSRVMVLPVRVFTKICIC

Sequence

>CNT30666221
CTGAAGGCTGCAAAGGCACCATTTTCAATATATGCAGGCGAAAGGCGAAACAAAGGCATAATTCAATGCAAGAATCTGCAGACAAAACAAGGTATGGGCA
AGAACGACACAAATTACGCACGATATTAAGGGCTCACTTATTAATCATATAACCAAAGCCATGGGAAGTTTTTAGACAACCGAACAGATCAGTGATGGAA
ACAACGACACGACCAGACAAGGGCACCCATTGGAGAACAACGGCGACACAAGACCTGTGAACCCTGGAGACAGAAGCAACGCCATGACCAGTCACTTACT
GGCCACCACGCAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGACCATCCTCGAGCTGCTTGCCAGCAAAGAT
GAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATGGTGTCCGATGACTCGACCTCAAGGGTGATGGTCTTG
CCGGTGAGGGTCTTCACAAAGATCTGCATCTGTA