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Detailed information on CNT30253996


BLAST search results

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 2e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30666221Avena sativaTriticum dicoccoides31.2944.9494.58240forward
CNT30592819Avena sativaEragrostis curvula30.2539.6694.4232forward

Expression of CNT30253996

Peptides detected in this lncRNA

>peptide 1 (40 aa)
IFPSKGAKTQFLFSMFSILHSPETKSRKYYIQQHTTLSST*

>peptide 2 (42 aa)
YFLVKEQKHNSCFQCSPFYIHLKQNQESTTSNSTQHCQALNL*

>peptide 3 (56 aa)
MRRCWSGGIPSLSWILALTLSMVSEDSTSRVMVLPVRVFTKICICREENRMVSLKKK

Sequence

>CNT30253996
ATATTTCCTAGTAAAGGAGCAAAAACACAATTCCTGTTTTCAATGTTCTCCATTTTACATTCACCTGAAACAAAATCAAGAAAGTACTACATCCAACAGC
ACACAACACTGTCAAGCACTTAATTTATAACTCCACTCAGTTAGAAATTTAGGAATTTGCAAACTATTTCGTAGAAACAGAAGTACAGGACTATTATCAT
TGGAGGCAAACAGTCCAACCAGAAGAAATCAAATCGACAGTAAAGAAAGAAAAAATCACCATCCAGCAAACTAGAATAAGCAAAGCAGCAGGGGACATAA
GAACTGGAGGGAAACAATCGAGCACAGGGAGATTACTCCCAAGTTCACTTGTTCATTACTACAACTGCTGAAACATCAACTGTTTTCACGACGCCAACAC
ATAGGGAGACTCCGGTACAAACCAGACAGACTTGACTTCAAGGGCGACAGGACAGCCCACAAGGCACAGCAGCAGCTCCAACACCAAGACACTTACTGAC
CACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAG
GCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCTACCTCAAGGGTGATGGTCTTGCCA
GTGAGGGTCTTCACAAAGATCTGCATCTGCAGAGAAGAAAATAGGATGGTAAGTCTCAAAAAGAAGA