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Detailed information on CNT30665821


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 3e-116

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30395000Triticum dicoccoidesTriticum turgidum90.8288.4199.57702forward
CNT30589923Triticum dicoccoidesMusa acuminata60.03102.285.56464forward

Expression of CNT30665821

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSRFLAKVSGSADNPAVSHP*

>peptide 2 (69 aa)
HDSSVHSLVHTLCLINLHCAQLARGPLARSITVQIKTQSTCSYTLIHDVQVHMHISSDGRTDGRMAKHI*

>peptide 3 (40 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGPSPRGPPPTR*

Sequence

>CNT30665821
CACACGATTCTTCCGTCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACATTGCGCACAGCTAGCGAGAGGACCTCTCGCTCGCTCGATCACGGT
ACAAATAAAAACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGGACGGACGGACGGATGGCT
AAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCACGCGTTGTTGTTGACTGGGTCGGCGACGTGGTCGAAGAGGTTCTCAACGGGTCCCT
TTCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCGGG
GCCCTCGCCGAGGGGGCCGCCACCAACGCGGTAGCCCTCGATGAAGCCCATGAGCACCACCTGAACCGCCCAGATGGCCAGGATGCTCTGCGCGTGCACC
AGGTTGGGGTTGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACA
GGATCTCCGGGAACACGCACCCCAGGGCGCCGAGCATCGCCCACCGTGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCTGGGTCAGCCGA
CAATCCGGCGGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACTTGGGACGGTCAGGGCCGTAC