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Detailed information on CNT30395000


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 3e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30665821Triticum turgidumTriticum dicoccoides88.4190.8299.57702forward

Expression of CNT30395000

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MTHDSSVHSLVHTLCLINLHCAQLARGPLARSIMVQINTQSTCSYTLIHNVQVHMHISSDGRTDGRMAKHI*

>peptide 2 (31 aa)
MPYTRAPCQLMILSDDTRFFRPFPRAHLVLN*

>peptide 3 (39 aa)
MPFLDRISGNTHPRAPSIAHREWITSSSRFLAKVSGSADS

>peptide 4 (40 aa)
MACTKKPNMENMARRPFLSSFTLSSAAVSGPSPRGPPPTR*

Sequence

>CNT30395000
CCTGTAGCCTCGTGCTTGTCATCTTCTCTATTGTAGTGCATATATGCCGTATACGCGCGCGCCATGCCAGTTGATGATCTTGAGTGATGACACACGATTC
TTCCGTCCATTCCCTCGTGCACACCTTGTGCTTAATTAATTTACATTGCGCACAGCTAGCGAGAGGACCTCTCGCTCGCTCGATCATGGTACAAATAAAC
ACACAAAGTACGTGCAGCTACACGTTGATCCACAACGTACAAGTACACATGCATATCTCGTCCGATGGACGGACGGACGGACGGATGGCTAAACACATTT
AGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCACGCGTTGTTGTTGACTGGGTCGGCGACGTGGTCGAAGAGGTTCTCAACGGGTCCCTTTCCGGTGAC
GATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGAGCTCCTTCACCTTGAGCTCGGCGGCGGTGTCGGGGCCCTCGCCG
AGGGGGCCGCCACCAACGCGGTAGCCCTCGATGAAGCCCATGAGCACCACCTGAACCGCCCAGATGGCCAGGATGCTCTGCGCGTGCACCAGGTTGGGGT
TGCCCAGGTAGTCGAGGCCGCCCTCGGAGAAGATCTGGGCGCCGGCCTTGAACCACACGGCCTCGCCGAACTTGATGCCGTTCTTGGACAGGATCTCCGG
GAACACGCACCCCAGGGCGCCGAGCATCGCCCACCGTGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAAGGTCTCTGGGTCAGCCGACAGC