Detailed information on CNT30646848


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SIY8|LAC5_ARATH, E-value = 5e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317742Rosa chinensisCorylus avellana33.1227.5484.87152forward
CNT30715169Rosa chinensisMalus domestica golden67.184.1581.49308forward

Expression of CNT30646848

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MEMLFGSTKETLFMLAVKRVPLGPWHLLEGKFLGQLLSPRPTVKKRFSSISVGTSTFLGLRKLVVKGLV*

>peptide 2 (32 aa)
MVGDGEEKLLVKSGVDDSEEVGFAGVYGNYHCV

Sequence

>CNT30646848
CCGGAGTTGGGCTGCCAGAGTGATTGGCTCACGTTGCCGGTGTAGTCAAACTGCCGCGGCGGGTTTGCGGGGAAATCAGAAGTGACAACTCCGGGGATAT
TCTGCTGGTAAGCTTGAAGGATGGAGATGTTGTTTGGTAGCACAAAAGAGACATTGTTCATGCTGGCGGTGAAGCGCGTGCCGTTAGGGCCTTGGCACCT
ACTGGAGGGGAAATTTTTGGGGCAGTTGTTGAGTCCGAGGCCGACTGTGAAGAAGAGGTTCTCGTCGATTTCGGTGGGGACTTCGACCTTTCTAGGGCTT
CGGAAGCTGGTGGTGAAGGGCTTGGTGTAGGAGGCGTCGGCACCGACAACGGTGAGTTTATGGTTGGCGACGGTGAAGAAAAGTTGCTGGTTAAGAGCGG
CGTTGATGATTCGGAGGAGGTTGGTTTCGCCGGAGTCTATGGGAACTATCACTGTGTCT