Detailed information on CNT30520553


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4A7|APR1_ORYSJ, E-value = 4e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639347Setaria italicaNymphaea colorata20.835.0291.4370forward

Expression of CNT30520553

Peptides detected in this lncRNA

>peptide 1 (93 aa)
NARRTNDTNRQHHHHGQTQTENDDSRSLAASHRRLLTKARSESTSLFSDGFSIPVRVRDTTAGLSKMSGAPAEPLPLADLGAAACPSFSMLPL*

>peptide 2 (35 aa)
MLDGPTTPIANTTTMDRHRQRTMTLAPWRPLTGGC*

Sequence

>CNT30520553
AATGCTAGACGGACCAACGACACCAATCGCCAACACCACCACCATGGACAGACACAGACAGAGAACGATGACTCTCGCTCCCTGGCGGCCTCTCACCGGA
GGCTGTTGACGAAGGCGAGGAGCGAGTCGACGTCCCTCTTCTCGGACGGGTTCTCGATCCCGGTCCGGGTCAGGGACACCACGGCGGGGCTCTCGAAGAT
GTCCGGGGCGCCCGCCGAGCCGTTGCCGTTGGCGGACTTGGGCGCCGCCGCCTGCCCGTCCTTTTCGATGTTGCCCTTGTGAAGGCCGCACTCCTTGGCC
TTGGCGTCCTCCCACCACCACCGGCCTTCACGCTCG