Detailed information on CNT30627912


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223487Daucus carotaHordeum vulgare12.622.2787.92298forward
CNT3058266Daucus carotaAmborella trichopoda3.2526.1996.177forward

Expression of CNT30627912

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MLTRSGLDPNPIAAISSERQMPVSGPSKTDFAADSVASDAEA*

>peptide 2 (34 aa)
YSFISIYSIVAKKPLLGCQETLRGNKACYMLITR*

>peptide 3 (29 aa)
MGRGMKLQVLFAVVRQRSEATCYIGSHAY*

>peptide 4 (46 aa)
MHINRSSSFFFFSFLRKKIHRCWSESSSNEEKKLQPSTAKKRRCLR*

>peptide 5 (52 aa)
MTAFFSCISRSEWERRGLNPVIFLPLVELIGGSEQKKKRSYSSPIPSYLRKT*

>peptide 6 (42 aa)
MQARRISLNQSFSSHRGYGSRTHTRTTIHLNSNCRPLNHLATG

Sequence

>CNT30627912
GTATAGCTTTATAAGCATATACAGTATAGTAGCAAAGAAACCGTTGCTAGGATGCCAAGAGACTCTACGAGGCAATAAGGCGTGTTATATGCTTATAACA
AGGTAGTTTACTTGCTGTTAATGTATCCGGTCTTACCCAACCAGCTTATGGCACTGTAGCAATTCAATTGACTTGAAAGAAATCCCTTAGCTTAGCGACA
TCCGAGGTCGAATGCTTTTCTGCTGTTCAAAGAAATGCTTACCAGGTCTGGGCTGGATCCCAATCCAATAGCCGCAATTAGTTCGGAAAGACAAATGCCG
GTCTCGGGTCCTAGTAAGACTGACTTTGCAGCAGATTCCGTGGCATCGGACGCAGAGGCATAGGCACAGGTGGCATCGTGCGTAGGTAGAGGCGTAGGCA
CAACCCTATTCTATTAGTAGCCTTAAATGGGGCGGGGCATGAAGCTACAGGTTCTATTTGCGGTCGTGAGACAGAGGTCGGAGGCAACATGTTATATAGG
CAGCCATGCATATTAATAGATCTTCTTCTTTCTTCTTCTTTTCTTTCTTGAGAAAGAAAATCCATAGGTGCTGGAGCGAAAGCAGCTCGAACGAAGAGAA
GAAGCTGCAACCATCAACGGCAAAAAAAAGACGTTGCTTGCGTTAGTGTTCGTAACGAATCCCTCGGGAGGGCATAGGAAAGCGACTACACCACCATTGT
TTGAGCTTATATCGATCGTTCCCCACCACAGGTTTATCCTGCGATTTCTCTTTACTGAACCTGGCCGAAAGGATTCGTAATGTATGTGTCAACGTTGACA
AAGCTGTTTACGTAATAGGCTGCTGGCTAGAAACATAGGAATTTTGAATGTTGAGATGACTGGTTTATCGATACACTCGAGTAGACAACAAGCCCAACTT
ATTTAGCCTCTATCGCGCAAAAGGGACTCCACAGGTGTTATGTGTTACATTAAAGCATAAACTACGGATGACAGCATTCTTTAGCTGCATATCGAGGTCG
GAATGGGAACGAAGAGGACTAAACCCCGTAATCTTCCTGCCTCTGGTCGAGCTAATCGGCGGTAGCGAGCAGAAGAAGAAGCGAAGCTACAGCAGTCCCA
TTCCTTCTTATCTACGTAAGACATAGAAGAGAGTTCAGCTAGCTTTCCGTAACGGGCTACTAACTACGACCTTGCTTCCCTATATTAGCAGCACGTCGAA
GGCCTTCGTCAGGTGTCGGAATCACATTTAGATTGTGGTCTATGAACTCAATACCAGATAAAGAAGCAGCTAACAACTGAAAGAATAGAGGGAAGGTAGC
ATTGCTTTCACACTTCTCTCTTCGTCATTCTAAAGCAAGGAATGAAGTAGCCCGTATAGCAAGAAGGAAGGGTATAGGAAATGCAATGAACTTCATCGTA
ATAGATAGATCATAATTTAATGCGTCGAACTCTAATGAGAGATTGTTGCATTCATTAAATCAAAGTAAACGATACATGTTGATTGCGCGGATAAGCCTTC
TTTCCGGGAGTTATGAGTGAGTAGCTACTATGGTAAAAGCCCCATATGCTATCAGTAAATGATACACGTTGATTGCGTGGATGCTAGTATCCTTGGTGTT
ACCTTACATCCACGTAGGATAGAGGTTAAATAAGTAGGTTGAAGAACGAAGTCTAGTGCCAATGGTACAATCTCTTAGCAGTTAACAACAGCCATCTGAT
TCTCATATATAAGAATTCCCGGCAGGCGGCATCAAAGCACAACGGCTTTCGGCGGAGTTTACGCCTTCCTGTACAGGTTTCTCACAGATAGATGAATAGC
AAATACAAGTGAAGCAGCCGGCCTAGAAGAGATATGTTCTTCTTCTATCTCTTGCACAAAGAAAGCTAGCTCTATTGGCAATCTCTATTCTTTCTATAAG
ACCTACTCCCGCTGGTCGAGCATCTTTCAGAACCTACGGCAAGTAAGAAAAAAGGTGCATAAGAGAAGTTTAGTGTTCTAGAAAGAGTAGAAAAGGGATA
TATGAAGTTCGTTCTCTTCCTCTGTGCATCTCTGTGATGGGTAAATCTCCATGAAAAAGGGGCAACTTTCGTGTAGTTTGTGATTGGATGTAACTGTTAA
GATTTTCTCTCGAATAAATCTTTCTCTTAATAGATCTCTTCTTGTTTCTCAATTTTCGGAGAATGCGGCGTTGTATTATTGTAAGTTCTCTGTTCCAAAC
ATTTCCTGAAAGTAGACGACAAGTTTGAAATCTTAATGCAGGCACGGCGTATCTCGTTGAATCAGTCTTTTTCGTCACATCGGGGCTATGGGAGTCGAAC
CCACACAAGAACGACCATTCACTTGAACTCTAACTGTCGCCCGCTAAACCACTTAGCTACCGGGAT