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Detailed information on CNT30223487


BLAST search results

BLAST vs Swiss-Prot:
sp|P26866|RT04_MARPO, E-value = 3e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30527430Hordeum vulgareEucalyptus grandis10.3127.1790.58138forward
CNT30627912Hordeum vulgareDaucus carota22.2712.687.92298forward
CNT3058266Hordeum vulgareAmborella trichopoda21.1596.2688.34283forward

Expression of CNT30223487

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MLLFRFSLRERFLLMDLLLFLNLRRIRRWIRESSLFRTFPGSRRHVLNLNAGMAYFVESVFFATSRIKGIEPNSSTNPPRMVLP*

>peptide 2 (43 aa)
MSNGYQSIIQTNPSMTYRLPCLRKSVTKMETNRNHVRSCFLIE*

>peptide 3 (70 aa)
MDLLLFLNLRRIRRWIRESSLFRTFPGSRRHVLNLNAGMAYFVESVFFATSRIKGIEPNSSTNHPRMVLP*

Sequence

>CNT30223487
TAATGGATCTCCTCTTGTTCCTCAATCTTCGGAGAATACGGCGTTGGATTAGAGAAAGTTCTCTGTTCCGAACATTTCCTGGAAGTAGACGACACGTTTT
AAATCTTAATGCTGGCATGGCATATTTCGTTGAATCAGTCTTTTTCGCCACATCGCGTATAAAGGGAATCGAACCCAACTCTTCCACGAACCACCCACGA
ATGGTCCTCCCTTAATTCAATGAACTATGAGAATTCCTTTTTTAGTTTTTTTCTTTTCAGTTCTCATAAGTCCTTGATATACTAGCAGAAACTCAATACT
TGACCGACTGCGTCACAGTGCTCAGGTAAAGTGGCAGTGGTTGAAAGCGAGCGGAAACGTCAGTGTTTTCTGTGCGTTACGATAGTAGTGGTGAAAGAAA
ATCCAATTCAAATATCTCAACGTAAAAGGAAAATCGTTTCACTTTGAAAGGAAAGCTAGCTATATNATGTCGATATAGAAAGATCTCCTTATTTCAAAAC
CGCGGGTTCTCGCGTCATTTTCTTTAAAAGATATTAGATCACCGTGGGAAACTTTCAAATGAGTAATGGTTACCAGTCCATTATTCAAACAAACCCTTCG
ATGACTTATCGGCTGCCTTGCTTGAGGAAGAGTGTCACTAAAATGGAGACGAACCGGAATCACGTCCGATCTTGTTTCTTGATTGAGTAAAAAAGGGATA
TATGAAGTTCGTTCTCTTCCTCTGTGCATCTCCCTTATGGGTAAATCCCCATAATAAAGAGACAACTTTCGTGTAGTTTGTGATTTGATGTTACTGTTTA
GATTTTCTCTCCGAGAAAGATTTCTTTTAATGGATCTCCTCTTGTTCCTCAATCTTCGGAGAATACGGCGTTGGATTAGAGAAAGTTCTCTGTTCCGAAC
ATTTCCTGGAAGTAGACGACACGTTTTAAATCTTAATGCTGGCATGGCATATTTCGTTGAATCAGTCTTTTTCGCCACATCGCGTATAAAGGGAATCGAA
CCCAACTCTTCCACGAACCCCCCACGAATGGTCCTCCCTTAATTCAATGAACTATGAGAATTCCTTTTTTAGTTTTTTTCTTTTCAGTTCTCATAAGTCC
TTGATATACTAGCAGAAACTCAATACTTGACCGACTGCGTCACAGTGCTCAGGTAAAGTGGCAGTGGTTGAAAGCGAGCGGAAACGTCAGTGTTTTCTGT
GCGTTACGATAGTAGTGGTGAAAGAAAATCCAATTCAAATATCTCAACGTAAAAGGAAAATCGTTTCACTTTGAAAGGAAAGCTAGCTATATGAGATCGA
AATCACTCTATCTACGATATTCATTGCACCATGATTTC