Detailed information on CNT30372943


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3059711Arabidopsis thalianaArabidopsis lyrata20.3427.8789.58480forward
CNT30478244Arabidopsis thalianaArabidopsis halleri8.7322.6689.81206forward

Expression of CNT30372943

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MPTVIFEEYEQKDNLIWKTFPSWNLNSSLTKLMGHEMAEFS*

>peptide 2 (38 aa)
MPCFLILLISSLSQFVCCFLQLILFGSGFLQKMTVPPT*

>peptide 3 (58 aa)
MMGHGLLLSFSCELLTGLSGRNTPVPRGLTRAAPLSSPFGLTMEPLWFNAYHILGFRS*

>peptide 4 (47 aa)
LVEVSNRCERIHWIIRCPVYLLTHEALAHQLFDEIPKPKNFAHRDLD*

>peptide 5 (55 aa)
MKWQNSASDVLCSIHYPKKCFLAPRRESQDGRCFLFEEIKVIRRGSRTLVLHQFP*

Sequence

>CNT30372943
GGCTTGTCGAAGTTTCCAACAGATGTGAGCGTATCCATTGGATTATTCGTTGTCCGGTTTATTTGCTGACTCATGAGGCACTCGCCCACCAGTTGTTCGA
CGAAATTCCTAAACCAAAAAATTTCGCCCACAGAGATTTAGATTGAGTCTACCTGAAATGTGGGATAAATTTCGTATTTTGCGTGAGGTTTCGCGGAGTT
TAGAGAATCAGTGGCGCACTGGCGCGTGATGCGTTTTCTTCTACTCTTTTGGGTACGTATTCGCTCTTTACTGCTATGGAAGTGTGTGTTGCTTAGTTTT
CGTCTCTCTTAGCTTCCCTAGGTTAAAATCTAATACGGAAATGTCTCTGTATTCTATAATTTTGACTTTTGAGCTGGTAATTAGGTCTTATCCTTAAAAC
TAAGTGAAGGGCATTCTTTGAATAGAACCTAGGACCTCTCGCTGCCAAAAGAAGAATTATATTCATGGCTTGTCCTAAATGCTCTGTTGCTGATGTAATT
GGGTTCAAGCATTCTGTTTTGGTGTTTAAAATGCTTTTTTGAAAAAGGAATGAGCTTTTTACTGTAAATTTACACCCAAGGCTTGTCCTATTGAAGGGTC
TCGTGCTTGAAGGAATCTGGAAACTTATAGTTGGTTTAAATTCAGTCTGTTTTATTTCTTTATCTTGAAGCTGTTACTGAGACCTATCAGTTGAGTTTAT
GGTGGATTGTTTGTGATTCTGATGTTGTGGAAGTTACTTTTTAGGTGAATCAACAATGTTCAAATGATGTATGTGATCTGTTAAAAGTCCGATAGCAAAT
ACAGATTGTATGCAATAAGTCTTGGCAGGCATTTAGAGCATATGTTTTACAAAAAGACAATGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCC
AAAGCGAGAATCATACCACTAGACCAAATGCCCTGTTTTCTTATCCTTTTGATCAGTTCTTTATCACAATTCGTTTGCTGTTTTCTCCAGCTCATTCTTT
TTGGATCTGGCTTCTTACAAAAGATGACAGTCCCCCCTACATGAAGTTTACTGAGAGGACGTGACAACGCTCATTTTTGGTGAAGCTGGCTGCGTACAAA
ACATTATGGTCCCCCCTTTATGAAGGTTACTGGTTAAAAAGATTTGTTGATTGTACGTGAAGACCGATCATACTTTGTGAAATCGGCAGCTTACAAAATG
TGAAGGGCCGACCTATATGTAGTTACTCGTTAAAACAGTGCACAATCTCTGGCAGCATACAAAACGTCTGTCTTTATTAATTAAAAAGACATATAGATTG
GACGCGGAACTGTGGAAATTCACTCTTGATGGTTTGTTTATCTTTTGAGGGCTCTATTCGGGATTAAGCAGGCAAGATGCAGTAAATGCCCACTGTTATC
TTTGAAGAATATGAACAAAAGGACAACCTTATATGGAAAACATTTCCTAGCTGGAACTTAAATAGTTCGCTTACAAAGTTAATGGGGCATGAAATGGCAG
AATTCAGCTAGCGATGTTCTGTGTTCAATCCATTATCCAAAAAAGTGTTTTCTAGCTCCACGACGTGAAAGCCAAGATGGGAGGTGTTTTCTATTTGAAG
AGATCAAAGTTATTAGACGTGGAAGCCGAACTTTGGTGTTACACCAGTTCCCTTAGTTAGGTTTCAACGGTTGCTCTTGAAACTTGAAGATGACAATGTC
TCCAATCATAGCTACATTTGTTGGCGAACTTCTCTGGCCTCCATTGACCCTGAACCACATACGTTAGGTACCAAGAAGGTCTATCGTGTGACATCTTTCA
GGTTCTTAAGGAGCTCGGTATAGAGAGGCAAGAAAGCAAGAATCATTGAGGAACCATACCCAATACTGATCTTTAGGGTGCCAACTCTAGAAAAGGACAT
TTAAACTTATTTTTGTTGTAGCCTCGGTAATTGTATAAGTTATACACAAAGTAAATAAAATGCTGATTGTACTAGCTAATAAGACCATTCCTTAGGAAGA
AAGATTTTTCTGGAATGAGAGGAGATGATGGGGCATGGCTTGTTGTTGAGTTTCTCTTGTGAGCTACTCACCGGTCTCTCAGGAAGAAACACTCCAGTGC
CACGTGGCTTAACTCGTGCTGCACCTTTATCATCACCATTTGGCCTCACCATGGAACCCTTGTGGTTCAATGCATACCACATTCTTGGCTTCCGATCATA
GTAGCTACCTACTCGATTACTCTACAGATTATGTAACAAAGATTGATTAATTATACATCCTTAGCATTAATAACAATAGTTCATGATGTTATAAAAGAAT
AGAAACCTGTGGAAATGGACGATCAAGAAAGAGTTCATTAAAAAGATTTGAAGGTAAGAG