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Detailed information on CNT30584541


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675680Echinochloa crusgalliSetaria viridis17.9830.3195.487forward
CNT30117377Echinochloa crusgalliOryza nivara9.9223.5310048forward

Expression of CNT30584541

Peptides detected in this lncRNA

>peptide 1 (43 aa)
RGNPRALLLVIIISLLYRSISLIPHGSLFTDRQVKGTERRDRY*

>peptide 2 (58 aa)
MFHCLPSNPHQLDHAYPVEHTLQSPSTYLTGESLDDGVVPRVRQVLQQEPQERKHRQPP

>peptide 3 (73 aa)
MYIPIITPQNSLSSPYAYSITTRPESPLQMEHTLIIQKGASTHRPCFIVCLPIPISSITRTQSSTLSNLHQRT*

Sequence

>CNT30584541
CCGTGGCAACCCACGGGCACTCTTGCTAGTTATTATTATAAGTCTATTGTATAGGAGTATCTCTTTAATTCCACATGGAAGCTTATTTACGGACAGGCAA
GTGAAAGGAACAGAACGTCGAGATAGATACTGATCAAACAATCTCGATCTACCCTTAACCTCCCCTGTCATTAATGTACATACCAATCATCACTCCTCAG
AACTCACTCTCCTCGCCATATGCATACAGCATTACAACACGTCCTGAGTCTCCTCTCCAGATGGAACACACACTAATAATCCAGAAAGGAGCTAGTACAC
ATCGACCATGTTTCATTGTTTGCCTTCCAATCCCCATCAGCTCGATCACGCGTACCCAGTCGAGCACACTCTCCAATCTCCATCAACGTACTTAACTGGA
GAAAGTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGGTGCTGCAGCAGGAACCCCAGGAACGCAAGCATCGCCAGCCTCCC