Detailed information on CNT30579447


BLAST search results

BLAST vs Swiss-Prot:
sp|P14279|CB25_SOLLC, E-value = 6e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30186466Echinochloa crusgalliSecale cereale34.1437.8791.33323forward
CNT30297959Echinochloa crusgalliTriticum aestivum31.6158.1791.3299forward

Expression of CNT30579447

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGPFPVTMACTKKPNMENMARPSGSKAPPG*

>peptide 2 (65 aa)
MLWGALLTVRRMVMRPPASAPETGRETRACPRKLVVWWSADAAIFSISGGELSTTCSGIGERSIEW

>peptide 3 (61 aa)
MSTTWQAQMARMLCACTRLGLPRYLGRSGPYLHAIDEHIYIFIYISSLVDNDGIDMNTANI*

>peptide 4 (46 aa)
MEHDVPDALGSALDGAAHGDAAAGIGAGDGAGDQGLPEEAGGLVER*

>peptide 5 (43 aa)
MARARSPERSLTCRGRSWWRRPMRCWRPGPRRGRRGSRWAPSR*

>peptide 6 (41 aa)
SGSGNPSRYLRKKQCRLIKRCFTHECYTYTIDSSADISIRA*

>peptide 7 (33 aa)
MYRQRQLLMWSLVSTEHTPARAKLLHAYCNKAE*

>peptide 8 (30 aa)
GIRKSVTLLKKETMSIDQTMFHSRMLHVHH*

Sequence

>CNT30579447
TCGGGATCCGGAAATCCGTCACGCTACTTAAGAAAGAAACAATGTCGATTGATCAAACGATGTTTCACTCACGAATGTTACACGTACACCATTGATTCAT
CAGCTGACATAAGCATCCGTGCCTAGTTTACAATCTCACACCACATGTACAGGCAGAGGCAGCTGCTGATGTGGTCACTGGTCAGCACAGAGCATACGCC
GGCGCGTGCAAAACTACTACACGCCTACTGCAACAAAGCAGAGTAGAGTACACAGGGCCACAGGGGCATGGCTCGAGCTCGATCGCCGGAGCGCTCGCTC
ACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCATGCGTTGTTGGCGACCGGGTCCGCGACGTGGTCGAAGAGGTTCTCGATGGGCCCCTTCCCGGTGAC
GATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCCCAGCGGGTCGAAGGCGCCGCCGGGGTAGACCTTGTCGAGGCCCTCGCCGAGCGGC
CCGCCGCCGACGCGGTAGCCCTCGACGAAGCCCATGAGCACGACCTGGCAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCA
GGTACTTGGGACGGTCAGGGCCGTACCTGCACGCGATCGATGAACATATATATATATTTATATATATATCATCTCTTGTCGATAATGATGGAATTGACAT
GAACACAGCTAATATATAAGAATGACATATGGAGCACGACGTACCAGATGCTCTGGGGAGCGCTCTTGACGGTGCGGCGCATGGTGATGCGGCCGCCGGC
ATCGGCGCCGGAGACGGGGCGGGAGACCAGGGCCTGCCCGAGGAAGCTGGTGGTCTGGTGGAGCGCTGACGCGGCCATCTTCTCGATCTCCGGCGGTGAG
CTGAGCACGACGTGTAGTGGGATTGGTGAGCGATCGATCGAGTGGT