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Detailed information on CNT30186466


BLAST search results

BLAST vs Swiss-Prot:
sp|P14279|CB25_SOLLC, E-value = 2e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30579447Secale cerealeEchinochloa crusgalli37.8734.1491.33323forward

Expression of CNT30186466

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MARMLCACTRLGLPRYLGRSGPYLHIHPSISKVH*

>peptide 2 (39 aa)
MVQINTQSTCSYTLIHDVQVHMHISSDGRTDGWLNSKHI*

>peptide 3 (73 aa)
MGETSSTYQMLWGALLTVRRMVMRPPKSPTLRTRSSRRGAVPRKLVVWCSADAAISLVAGAACELSEMDWWMVC

Sequence

>CNT30186466
TACTAAATGACACACGATTCTTCCATCCATTTGCTCGTGCACCTCGTGCTTAATTAATTTACATTGCGCACAGCCAGCGAGAGGACCTCTCGCTCGCTCG
ATCATGGTACAAATAAACACACAAAGTACGTGCAGCTACACGTTGATCCACGACGTACAAGTACACATGCATATCTCGTCCGATGGACGGACGGACGGAT
GGCTAAACAGTAAACACATTTAGCTTCCGGGGGCGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACTGGGTCGGCGACGTGGTCGAAGAGGTTCTC
AACGGGCCCCTTCCCGGTGACGATGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCCGGGTCGAAGGCGCCGCCCGGGTAGATGATG
TCGAGGCCCTCACCGAGGGGGCCGCCGCCAACGCGGTAGCCCTCGATGAAGCCCATGAGCACCACCTGAACCGCCCAGATGGCCAGGATGCTCTGCGCGT
GCACCAGGTTGGGGTTGCCCAGGTACTTGGGACGGTCAGGGCCGTACCTACACATTCATCCATCCATCAGCAAGGTGCATTAGTCCGGTGATACGATGAA
TGTTCGGGCCGGGGGAGAGAGAAGAGAGCCATGGGAGAAACTAGTAGCACGTACCAGATGCTCTGGGGCGCGCTCTTGACGGTCCGGCGCATGGTGATGC
GGCCGCCGAAGTCGCCGACGCTGCGGACGAGGTCATCGCGGCGCGGGGCGGTGCCGAGGAAGCTGGTCGTCTGGTGCAGCGCCGACGCGGCCATTTCGCT
GGTGGCTGGGGCTGCCTGCGAGCTCAGTGAGATGGACTGGTGGATGGTGTGTG