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Detailed information on CNT30579442


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691961Echinochloa crusgalliOryza sativa15.8321.5480.83120forward
CNT30562712Echinochloa crusgalliActinidia chinensis24.0127.0881.87182forward
CNT30230612Echinochloa crusgalliAnanas comosus15.342.9688.79116forward
CNT30346032Echinochloa crusgalliEragrostis tef28.555.9694.91216forward
CNT30362887Echinochloa crusgalliSorghum bicolor16.4940.3293.6125forward

Expression of CNT30579442

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MTSVRVWNSTPMVALESRLNSLRAKRARICDLPTAESPMSTTLKT*

>peptide 2 (57 aa)
MASSLPGSLCRLASSLARARRRLRRSARGEFWVGFFYLISRQGSGGDARDGGGHCSVG

Sequence

>CNT30579442
GTTTTCCCTTAGTAGGGTGCAAGGCAAGCTAAGCAGACCACCTCAACCACCGGGGTGCAGAGATCTACAATTCTACTAACCACCTTTCGTGCAGAGATCT
ACAATTCTACTAACCACCTTTCGTGCAACAATGGCGTACCAGAAATCGTCAGTAGCTAATTCGCGCACGCCGCATCAAAATCGAACGAACAATGCAGCGA
TCTGAACTCCCGAAGACGCGAAACAGAGAGAAATAAAACTTCAAACGACTAAGCGCTCTTCGCTAGCTCACGGCTGAGCATCAGCACCTAATCCCATTTT
TCCCTCTTCCTACGGGATCGTGAACCCAAATGATCGAAGGGGAGCAACGCATAAGAGTGGACGGACTTGCCTCTCCTGGCCGGCGGTGTCCCAGATCTGC
GCCTTGACGGACTTGTGGTCGATGACGAGCGTCCGCGTCTGGAACTCGACCCCGATGGTGGCCTTGGAGTCGAGGCTGAACTCGTTGCGGGCGAAGCGGG
CCAGGATCTGCGACTTGCCGACCGCGGAGTCGCCGATGAGCACCACCTTGAAGACGTAGTCCACCTTGTCCCCGCCCCCCGCCATGGCCTCCTCCCTCCC
TGGGTCGCTTTGCAGGCTGGCTAGCTCGCTCGCGCGCGCGCGACGAAGGCTGCGGCGGAGTGCGCGTGGGGAGTTTTGGGTTGGATTTTTTTATTTGATT
TCGAGACAAGGAAGCGGGGGAGACGCACGCGACGGCGGTGGACACTGCTCTGTCGGCC