Detailed information on CNT30230612


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30346032Ananas comosusEragrostis tef42.9630.0593.97116forward
CNT30362887Ananas comosusSorghum bicolor43.738.0683.9118forward
CNT30579442Ananas comosusEchinochloa crusgalli42.9615.388.79116forward

Expression of CNT30230612

Peptides detected in this lncRNA

>peptide 1 (65 aa)
DPDRSLGVEGELVPREPRQDLRLPHRRVPDEHHLEHVVDSVPHGLAEEVEIEEEEEEGGGEGILR*

>peptide 2 (37 aa)
STPIVALESRANSFRANRARICDFPTAESPMSTTLNT*

>peptide 3 (37 aa)
MASPKRSRSRRKRRREEVRGSSARANREVGERVRSRW*

Sequence

>CNT30230612
TCGACCCCGATCGTAGCCTTGGAGTCGAGGGCGAACTCGTTCCGCGCGAACCGCGCCAGGATCTGCGACTTCCCCACCGCCGAGTCCCCGATGAGCACCA
CCTTGAACACGTAGTCGACTCTGTCCCCCATGGCCTCGCCGAAGAGGTCGAGATCGAGGAGGAAGAGGAGGAGGGAGGAGGTGAGGGGATCCTCCGCTAG
GGCAAATCGCGAGGTAGGAGAAAGAGTGAGGAGTCGGTGGTGAGCGGAGTAAGGTGGTGTGTGGGAGGAG