Detailed information on CNT30362887


BLAST search results

BLAST vs Swiss-Prot:
sp|P25766|RLGP1_ORYSJ, E-value = 1e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30562712Sorghum bicolorActinidia chinensis209.2391.9462forward
CNT30230612Sorghum bicolorAnanas comosus38.0643.783.9118forward
CNT30346032Sorghum bicolorEragrostis tef45.4836.5388.65141forward
CNT30579442Sorghum bicolorEchinochloa crusgalli40.3216.4993.6125forward

Expression of CNT30362887

Peptides detected in this lncRNA

>peptide 1 (81 aa)
GAGVDVEGARLELDSDGGLGVEVELVAGEAGEQLRLAHSGVADENHLEDVIDPLAQLPVATAPRHLFSPSSPHFPQSQSTV*

>peptide 2 (49 aa)
VRASMLRVRVWNSTPMVALESRLNSLRAKRASSCDLPTAESPMRTTLKT*

Sequence

>CNT30362887
GGTGCGGGCGTCGATGTTGAGGGTGCGCGTCTGGAACTCGACTCCGATGGTGGCCTTGGAGTCGAGGTTGAACTCGTTGCGGGCGAAGCGGGCGAGCAGC
TGCGACTTGCCCACAGCGGAGTCGCCGATGAGAACCACCTTGAAGACGTAATCGATCCTCTGGCCCAGCTCCCCGTGGCTACCGCCCCGAGACATCTCTT
CTCCCCTTCCTCTCCCCACTTTCCCCAATCTCAATCAACTGTCTAGAATTGGTTTCTCCTATCACCTCTCTCGACTAATCACAAGTTGGAGGAGGAGGAG
GAGGAGCAGG