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Detailed information on CNT30579324


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 6e-116

BLAST vs NONCODE:
NONSTUT002515, E-value = 3e-27

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369948Echinochloa crusgalliOryza glumipatula40.8434.1392.08341forward
CNT30116671Echinochloa crusgalliOryza nivara60.9660.8192.14509forward

Expression of CNT30579324

Peptides detected in this lncRNA

>peptide 1 (43 aa)
HSMCLGSGSGNPSRYLRKNQWSIDQAMVHSRMLHVPLIHHQLT*

>peptide 2 (29 aa)
MAHREWITSSSRFRAKVSGSAESPAVSHP*

Sequence

>CNT30579324
ACATAGTATGTGCCTGGGGTCGGGATCCGGAAATCCGTCACGCTACTTGAGAAAGAATCAATGGTCGATTGATCAAGCCATGGTTCACTCACGAATGTTA
CACGTACCATTGATTCATCATCAGCTGACATAAGCATCCGTGCCTAGTTTCCAATCTCACACCACACGTACAGGTACAGGCAGCTGCTGATCTGGTCACT
GGTCAGCACAGAGAGCATACGCCGGCGCGTGCAAAACTACTACACGCCTACTGCAACAAAGCAGAGTAGAGTACACAGGGCCACAGGGGCATGGCTCGAG
CTCGCCGTCGCCGGAGCTAGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGTAGGCCCACGCGTTGTTGGCGACCGGGTCCGCGACGTGGCCCAGCGGGT
CGAAGGCGCCGCCGGGGTAGACCTTGTCGAGGCCCTCGCCGAGCGGGCCGCCGCCGACGCGGTAGCCCTCGACGAAGCCCATGAGCACGACCTGGCAGGC
CCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACG
GCCTCGCCGAACTTGACGCCGTTCTTGGCCAGGATCTCCGGGAACACGCAGCCCAGCGCGCCCAGCATGGCCCACCGGGAGTGGATCACCTCCAGCTCAC
GGTTCCGGGCGAAGGTCTCCGGGTCGGCGGAGAGCCCCGCCGTGTCCCACCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTACGACGGCGTCTGCTCGGA
GAATGGGCCCAGGTACTTGGGACGGTCAGGGCCGT