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Detailed information on CNT30116671


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10HD0|CB23_ORYSJ, E-value = 8e-117

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30799Oryza nivaraZea mays42.1742.5391.22353forward
CNT30229088Oryza nivaraAnanas comosus46.8345.0691.33392forward
CNT30579324Oryza nivaraEchinochloa crusgalli60.8160.9692.14509forward

Expression of CNT30116671

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MHCCNCNCRVGAWLLQVYTWYVGWHHLDRVVVLTCRGRSWWRMPRRCWRRGRRRRAGRRRRLGTPCRGPRRAGRRRRGSPRRIP*

>peptide 2 (59 aa)
MVRWLAPSRSCRCAHLPGTKLVAYAQALLATGSATPSGSKAPPGYTLSRPSPSGPPPTR*

>peptide 3 (45 aa)
LGRRTNWHRFSWLRCRSYNNDTSLIRSSLGCGLRLTLNLDPKKQR*

Sequence

>CNT30116671
TTGGGTCGACGCACAAATTGGCATCGTTTTAGCTGGCTTCGTTGTAGATCCTATAATAACGATACATCATTAATTCGATCATCCCTTGGATGCGGCCTGC
GGCTTACATTAAATCTCGATCCAAAGAAGCAAAGATGATGACAGACAGAAATTAATTAAGCTAGAAATCTCCTCGATCGATCACACACACACACACACAA
TTAAGGTACATACATACATGCACTGCTGCAACTGCAACTGCAGGGTCGGTGCGTGGCTACTACAAGTGTACACATGGTACGTTGGTTGGCACCATCTCGA
TCGTGTCGTTGTGCTCACTTGCCGGGGACGAAGTTGGTGGCGTATGCCCAGGCGTTGTTGGCGACGGGGTCGGCGACGCCGAGCGGGTCGAAGGCGCCGC
CTGGGTACACCTTGTCGAGGCCCTCGCCGAGCGGGCCGCCGCCGACGCGGTAGCCCTCGACGAATCCCATGAGCACCACCTGGACCGCCCAGATGGCGAG
GATGCTCTGCGCGTGCACCAGGTTGGGGTTCCCCAGGTAGTCGAGCCCCCCCTCGGAGAAGATCTGCGCGCCGGCCTTGAACCACACCGCCTCCCCGAAC
TTCACCCCGTTCTTGGACAGGATCTCCGGGAAGACGCAGCCCAGCGCCCCCAGCATTGCCCACCGCGAGTGGATCACCTCCAGCTCCCTGTTCCTCGCGA
ACGTCTCCGGGTCGGCCGATAGCCCCGCCGTGTCCCACCCGTAGTCTCCCGGGAACTCTCCGGTCAGGTACGATGGCGTCTGCTCCGAGAACGGGCCCAG
GTACTTGGGACGGTCAGGTCCATACCTGCACATATAT