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Detailed information on CNT30577572


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370973Oryza barthiiOryza glumipatula37.7110098.57560forward
CNT30110581Oryza barthiiOryza longistaminata44.7110097.29664forward
CNT30102895Oryza barthiiOryza rufipogon27.4180.2897.79407forward
CNT30551842Oryza barthiiOryza brachyantha22.1514.5185.41329forward

Expression of CNT30577572

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MLLLEIQLMLPCISTQSIFFLFSCVTTLICHSCCYTCSFLKICSLSGCNRDSENIK*

>peptide 2 (36 aa)
MNYYLNSVVFWLYLLLVESEMVFVVRFEFEIYEKLD*

Sequence

>CNT30577572
ACTCAAGAAACTTCTATCTATTACATGATCGTGCATTGTGCAAGATGGTTACTTACTTGATTTGGGGATGATGCAAAATTCAACTGTGACGACTGGTTGA
AAAGTACATTATTTTGTTTTATGAGATTCTTCACTATTATGCTTAAACTCATGTGCATCCATCCTTTTGTTACAGTGAAGCTATATGTTGTTGCTTGAGA
TTCAGCTGATGCTACCCTGTATCAGTACCCAATCCATTTTCTTTCTCTTCTCATGTGTTACAACTTTGATTTGTCATTCGTGCTGCTATACATGTTCATT
TCTGAAGATCTGTAGTTTATCAGGATGCAATCGTGACTCGGAAAATATAAAGTAGAGTGTGATTCCTTATACAATAAGACCCAATCTTAGATTCGATGTT
CACATGCTCATGAACCAAATATTATTGGAGTTGTCGGTTTGAATGATATGCACATTGAACTGTTACTAAAAAAAGCATGTTCTAAGGGGCTGTTCTGATT
TTTTATGTGCGACTTCATGCATTATCTTTAGGATGGTAAATTTGTAATGGTGAGTGAGTTTTGTTCTCATCAGAATCTTTAGCACCATTTCTATTAAATT
ANTCATCAATGGGTAACCTGTGTATGCTGTTCGATTCATGTGCTACAACTTTGCTCGATAATTCTTTCTTGGTTGTCTTAGACAATCACTGATTTAGTCT
GAAAGCAAATGATTTAACCTAATCAACCGAGTTNTATGCCGCCACAGGCAGCGCGGCATGGCGCGCCCCAGCCTCTAGTAGGAGTCCATGAGTAGCATAT
TTTTAATAAAGAGATCAATTTGAATAATTAGGGAGTCTATGAACAGAAACATAGACCTTTATAATTATAGCATNCATGCANTCATGTGCGNGCATTTCTC
ATTAACTCTTTCTTAGACTTATTACTGGGATTTTGCACATGGCAGCTAAGGAGAAACAATATGAAATGGATGGATTAGTTAGTTAATTTGAGTGTGCTTG
ATTTCTTTCGGTCATTGTTCTTACCGAAAGCAATATTTTCTTAATTTCTAACGGGAAATGTACACAGTTTTGCGAAGAAGAAGGGGGAAAAGAAGAGGAT
GAGTATGTATTGCTAGAGTTGGATGATTGTCTTTATCTGACATAAAACCAAATGCTCCATATGTGCTCTCTGGTATCTGATTCCTTCTGGTCGTCCTCGT
CTTGATCCAGATCAAGCGTGATCCCGATCTGCGCGCTTACTTTCTTGGCTTGGATTGATTGATTGAAAATGTGTGTGTTTCTCAGGCCGCCTCCTGTTAT
TAGGTTGAATTTGAGATGAACTATTATTTAAATTCTGTTGTATTCTGGTTGTATCTATTATTAGTTGAATCTGAGATGGTATTTGTTGTTAGGTTTGAAT
TTGAGATATATGAGAAATTGGATTGAATTTGGTGGGCTCAAATTTAATGGGCTTGTTTAGTGGGCTTTGATCTGATAGCTGGTTG