Detailed information on CNT30102895


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553457Oryza rufipogonOryza glaberrima31.5623.3993.12160forward
CNT3067339Oryza rufipogonLeersia perrieri22.099.2984.82112forward
CNT30596177Oryza rufipogonOryza meridionalis38.0730.9388.6193forward
CNT30370973Oryza rufipogonOryza glumipatula78.971.4397.75400forward
CNT30110581Oryza rufipogonOryza longistaminata72.1955.1297.81366forward
CNT30577572Oryza rufipogonOryza barthii80.2827.4197.79407forward
CNT30551842Oryza rufipogonOryza brachyantha64.114.3484.62325forward

Expression of CNT30102895

Peptides detected in this lncRNA

>peptide 1 (46 aa)
ATTTSATTKAAHVGEVGRDGSSAVAGGGGELGFAKKGEKKRMSMYC*

>peptide 2 (41 aa)
RRRPRQRRRRRTSARLGATDPARWRAAAVSSVLRRRGKRRG*

>peptide 3 (29 aa)
RDDDLGNDEGGARRRGWARRIQRGGGRRR*

>peptide 4 (36 aa)
MNYYLNSVVFWLYLLLVESDMVSVVRFESEIYEKLD*

Sequence

>CNT30102895
CGCGACGACGACCTCGGCAACGACGAAGGCGGCGCACGTCGGCGAGGTTGGGCGCGACGGATCCAGCGCGGTGGCGGGCGGCGGCGGTGAGCTCGGTTTT
GCGAAGAAGGGGGAAAAGAAGAGGATGAGTATGTATTGCTAGAGTTGGATGATTGTCTTTATCTGACATAAAACCAAATGCTCCATATGTGCTCTCTGGT
ATCTGATTCCTTCTGGTCGTCCTCGTCTTGATCCAGATCAAGCGTGATCCCAATCTGCGCGCTTACTTTCTTGGCTTGGATTGATTGATTGAAAATGTGT
GTTTCTCAGGCCGCCTCCTGTTATTAGGTTGAATCTGAGATGAACTATTATTTAAATTCTGTTGTATTCTGGTTGTATCTATTATTAGTTGAATCTGATA
TGGTATCAGTTGTTAGGTTTGAATCTGAGATATATGAGAAATTGGATTGAATTTGGTGGGCTCAAATTTAATGGGCTTATTTAGTGGGCTTTGATCTGAT
AGCTGGT