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Detailed information on CNT30110581


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370973Oryza longistaminataOryza glumipatula79.0793.7598.1525forward
CNT30102895Oryza longistaminataOryza rufipogon55.1272.1997.81366forward
CNT30577572Oryza longistaminataOryza barthii10044.7197.29664forward
CNT30551842Oryza longistaminataOryza brachyantha43.0712.6284.62286forward

Expression of CNT30110581

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MNYYLNSVVFWLYLLLVESDMVSVIRFESEIYEKLD*

Sequence

>CNT30110581
TAGGAGTCCATGAGTAGCATATTTTTAATAAAGAGATTAATTTGAATAATTAGGGAGTCTATGAACAGAAACATAGACCTTTATAATTATAGCATGCATG
CAATCATGTGCGGGCATTTCTCATTAACTCTTTCTTAGGCTTATTACTGGGATTTTGCACATGGCAGCTAAGGAGAAACAATATGAAATGGATGGAATAG
TTAGTTAATTTGAGTGTGCTTGATTTCTTTCGGCCATTGTTCTTACTGAAAGCAATATTTTCTTAGTTTCTAACGGGAAATGTACACAGTTTGGCGAAGA
AGAAGGTGGAAAAGATGAGGAAGAGTATGTATTGCTAGAGTTGGATGATTGTCTTTATCTGACATAAAACCAAATGCTCCATATGTGCTCTCTGGTATCT
GATTCCTTCTGGTCGTCCTCGTCTTGATCCAGATCAAGCGTGATCCCGATCTGCGCGCTTACTTTCTTGGCTTGGATTGATTGATTGAAAATGTGTGTGT
TTCTCAGGCCGCCTCCTGTTATTAGGTTGAATCTGAGATGAACTATTATTTAAATTCTGTTGTATTCTGGTTGTATCTATTATTAGTTGAATCTGATATG
GTATCTGTTATTAGGTTTGAATCTGAGATATATGAGAAATTGGATTGAATTTGGTGGGCTCAAA