Detailed information on CNT30577470


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554585Oryza barthiiOryza glaberrima54.5124.9499.911063forward
CNT30102896Oryza barthiiOryza rufipogon8.6278.5100168forward

Expression of CNT30577470

Peptides detected in this lncRNA

>peptide 1 (82 aa)
ATRRAMPPLLRPPDLGFYWSRRAQRPADHGRGRGDQICNWGQQARGGNCIICKKLWNPLSVIIAIKKPPHEATSSSFHTDGP*

>peptide 2 (60 aa)
MISIGLSPKPTGFQELVNKLREFVFKFWFMKFVRNIPVFHRISRNSEFRQCPKWKGLSES*

>peptide 3 (72 aa)
MIPTKSGWISRNFDIPTRFESRNRLRFREVSSKFKFELIKKREKQIKSYKYYDIHRTYWDINIKKKCIVCIY*

>peptide 4 (37 aa)
MYCVYLLKLTSGKKKKNKELKKKKNTYMGRIACTRPS*

>peptide 5 (35 aa)
MRTILFKLSCWVLVFTCYFQLFHKSIQKYSHFSME*

>peptide 6 (31 aa)
MRWLKIIPMIFLQVMQLLPQACCLLLPKLVK*

>peptide 7 (29 aa)
MTGPFVSGTGGIQNFAKSGGKPVNSEQIS*

Sequence

>CNT30577470
CCGCTACCCGCCGCGCGATGCCCCCTCTTCTCCGCCCGCCTGATCTAGGGTTTTACTGGAGCCGCCGCGCGCAGCGACCAGCCGACCACGGACGAGGACG
AGGGGATCAGATATGCAATTGGGGGCAGCAAGCTAGAGGTGGCAACTGCATAATTTGCAAGAAATTATGGAACCCACTTAGCGTGATTATTGCTATAAAG
AAGCCACCACATGAAGCGACATCGTCAAGTTTTCACACAGATGGTCCCTAAATGCGTTGGCTGAAGATCATACCGATGATATTCTTGCAAGTTATGCAGT
TGCTGCCTCAAGCTTGCTGCCTCCTGTTGCCAAAGCTAGTAAAATGAAAACATTAAATTAGTATAGCTGGACGGTTTTTCTTGCAGCCTTATGTTCTTCT
CTTCAGCTCATGAATTTCTATTTATCATAGGTAGAAAGTGGCAACAACATTAGTATGAGCTTTCCAGTCAAAAAAAAAAAACATTAGTATGAGCTAGCAA
CACTTTTGAGTTTACATGTTCTGAAAATGCATAAGGATTTCAGATTAGTGAAATTAAGTATTCTCTAGTCAAATATATTAGACGTTGGGAGGACAAAACT
TAGCTCTCCCAACATCAATTATATTTGACTGGAGGGAGTATTTGGGTTTTTATTTTTTAAATTTCTGGTGGTACATGTTTGAATCGTCAAACCGGTAGTT
GTTCCTTTGACATCATTTGTCATCCTTCTTTAATTAACTAGAATATTCATCTTATGAACTACTCTGATAATATTCTTCTTAATTACATCAATTTTTTTCT
TTTCCATCTTTTGTGATGAGAACCAGGGTTTATGATTCCGACGAAATCCGGTTGGATTTCGCGAAATTTCGATATTCCGACGAGGTTCGAAAGTAGAAAC
CGTCTGAGATTTCGAGAAGTTTCATCCAAATTCAAATTTGAATTGATAAAAAAAAGAGAAAAACAAATAAAATCTTATAAATACTATGATATTCATAGAA
CCTATTGGGATATAAATATTAAAAAAAAATGTATTGTGTGTATTTACTGAAACTTACATCAGGAAAGAAAAAAAAAAATAAAGAATTAAAAAAAAAGAAA
AACACTTACATGGGCCGGATTGCATGTACTAGGCCTAGTTAGTAGTTGGTCCAAATTACAGATTACAGATCGAAATTTCGATGATTTCGATCGGACTTTC
GCCAAAACCGACCGGTTTTCAAGAACTTGTTAACAAACTCAGGGAATTTGTATTCAAATTTTGGTTTATGAAATTTGTTCGGAATATACCGGTTTTCCAC
CGGATTTCGCGAAATTCCGAATTCCGCCAGTGCCCGAAATGGAAGGGCTTGTCGGAATCGTAAATCGTAAACCCTGATGAGAACTATTCTTTTCAAGCTT
TCTTGTTGGGTGCTTGTATTCACTTGCTATTTTCAGCTGTTTCACAAAAGCATACAAAAATACTCCCACTTCTCTATGGAATGAATTAAGATGATAGAAC
ACGGAAATCTTTGCACAGTAAATTAAATAAAACATTGAGTGGGGGTTGAAGTAGCAGAAAACCCCCCGTGTTATGGCTTGTGAATTGTTGGCCTTGTGGC
CATAATCTTCGATTTTATGGTTAAAGTTTTGACAAAACCCTAATCCATCCAAACCCTAAGTCTCATGGGGGCCAAGGTACCACTTTATGATAAATATTTT
GCAGTGATCCAAACCATCCTTTTGTTTTTCTTTGTTTTTTTTTAATTGTACATTGTTTCTTAATAATAGTATAGAATCAAGTTTAAAATGTCCAATAGTA
ACTTGTAATTGGCAGGGTTTACGATTATGACAGGCCCTTTCGTTTCGGGCACTGGCGGAATTCAGAATTTCGCGAAATCAGGTGGAAAACCGGTAAATTC
CGAACAAATTTCATAAACTAAAATTTGAATACAAATTCCCTGAGTTTGTT