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Detailed information on CNT30576856


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675286Oryza barthiiSetaria viridis8.5624.8993.64110forward
CNT30395323Oryza barthiiTriticum turgidum11.0522.8392.96142forward
CNT30566352Oryza barthiiActinidia chinensis7.6326.7892.8698reverse complement

Expression of CNT30576856

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MLYTHAVVTALPRYGSDHVPLLLECETELFKGFSSLKDHGFNKIIQRMEF*

>peptide 2 (41 aa)
MVSTRLFRGWSFSGIHQIFLASKVGINLLESLQSPILSIFS*

Sequence

>CNT30576856
CCGGGCTTAGGAATTGGGCCGAGAAAAAGCCTTGTACGGACTAAACGGGCCTGGCCTAATTAATATTGTCCTGAAAGACTTCTAAGAACAAGTTCATTTT
AGGTCTTATTTTCGCTGGTCATCAAACATCAAAACATTACCCATTTTCATTTATATCCCCCCCCCCGACCTTATAATCCTACACCTTTCTTAGGACTATC
AAGCCTTCCCGAATTAGGGCTAAATAAAGCGAGCACTCGGCAACTTCAATCTCACCTCTACCCCGCACTGAGGTCAAAACCATCTCTCGATCGGGGCTAT
ACTACTGAGTCGACCAATTCCTCGCCGCCCTTCTCTGTCTTTTCCCGCCGGGAGAAGATTCTAGTAAAGAGATGGCCCTTCTCGTCTGATCTGCATCAAC
AGGAATGCGGGAAAAGCTTCTTCTGGCCCCAGAGGCTACCTTTGCAAGGGCGCAAATTCACTTGGAACAATGCTGTGTCAGCTGCTAAGTTAGACAGATT
CCTTTTTACAATAGACTGGGGATTAAATGTTGTATACCCATGCTGTGGTGACTGCCCTTCCTAGATATGGTTCAGACCATGTTCCTTTGTTGCTGGAGTG
TGAGACTGAACTGTTCAAAGGGTTTTCAAGTTTGAAAGATCATGGTTTCAACAAGATTATTCAGAGGATGGAGTTTTAGTGGCATTCATCAAATATTTTT
GGCAAGTAAAGTAGGTATCAATCTGCTTGAAAGCCTGCAGAGTCCAATTTTGAGTATTTTCAGTTAGAATCTAGAGTCAGCCTATTCAGTTCTTAGCCCT
TAAGGGTAAGGCAGGGGGTAATATGGCTTCTTTTTAGAGAAGGGTAAAAATCTCTGGTTCTTTTCTTTATGGTACAGAAGGAGGTGAGATTAGGTTCCCT
TTTCTTCATTTTTGCATTTCTTATTCCGCTATTCTGAATATTTTTTTTTCTTTCTTATCTTATCTTACTTTCCTAGTTGTTCCAAGTAATGCGCGCGGTA
CCGACCATAGACCCTGTTCAATAAGTGGAACACATTAGCCGTCCGCTCTCCGGTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCGTTCTTAAAACCA
GCATTCTTATAGCGAGAGAACAAAATCTGGATAAATACTGATTCCTATTACTGGTAAAAAGATACAGATTAAAAGAAAGAGTTCTCGCGGGCCGGAATCC
TCAAAATTTTCGTTTGGAACATGAAATAGCTTGTATCCATAGAACATCTGTTGGTCATTCGGGAAGTCCCCCCGAGGACGACTCC