Detailed information on CNT30566352


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675286Actinidia chinensisSetaria viridis25.4121.0487.193reverse complement
CNT30407349Actinidia chinensisBeta vulgaris17.2125.8287.363reverse complement
CNT3048357Actinidia chinensisPrunus dulcis28.691.985.71105forward
CNT30390355Actinidia chinensisTriticum turgidum56.0129.5487.8205forward
CNT30309694Actinidia chinensisCamelina sativa23.7718.0194.2587forward
CNT30688894Actinidia chinensisTriticum urartu20.779.0685.5376forward
CNT30357533Actinidia chinensisLactuca sativa52.7318.9687.56193reverse complement
CNT30576856Actinidia chinensisOryza barthii26.787.6392.8698reverse complement
CNT30113020Actinidia chinensisFicus carica36.8911.3989.63135reverse complement

Expression of CNT30566352

Peptides detected in this lncRNA

>peptide 1 (35 aa)
LYFIFYFYLFIVSVIIKLVTCKQLYDILLCAIMLY*

>peptide 2 (63 aa)
MTSCYVQLCYINSLQCSYSYDLYIYNLTQGVLSWNPILTYGSGGFSYRRTRNGELSSIFRLTL*

Sequence

>CNT30566352
TTGTATTTTATTTTTTACTTTTATTTATTTATTGTCTCCGTAATAATAAAGCTTGTAACTTGCAAGCAATTGTATGACATCTTGTTATGTGCAATTATGT
TATATTAATTCGCTACAATGCTCCTATTCATATGACCTATATATATATAATCTCACTCAAGGGGTACTGAGTTGGAATCCCATTCTAACTTATGGTTCCG
GAGGATTCAGCTACAGGAGAACCAGGAACGGAGAGCTTTCCTCCATTTTTCGCCTGACTCTTTGATTTTAAGAACGCAGGTTTTAAGAATGAGTGATTGC
CCTTCTCCGACCCTTACTGCCCAACCGGAGAGCGGACAGCTAATGCGTTTCACTTATTGAGCAGGG