Detailed information on CNT30675286


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30407349Setaria viridisBeta vulgaris33.2660.2585.71147forward
CNT30566352Setaria viridisActinidia chinensis21.0425.4187.193reverse complement
CNT30606094Setaria viridisGossypium raimondii60.8670.7987.36269reverse complement
CNT30576856Setaria viridisOryza barthii24.898.5693.64110forward

Expression of CNT30675286

Peptides detected in this lncRNA

>peptide 1 (55 aa)
GGDIAQLVELCSCNWVVAITSWLSNCPGFPHLGSLGKRIKLALANSLMHYLFSTF*

>peptide 2 (41 aa)
MAKGRKIHGPTTLSPPRRNYEITPRTPSASRDHGPTIDPIQ*

>peptide 3 (29 aa)
MDRRHCLHPVGTTRSPQGHLRRPGIMDRP*

Sequence

>CNT30675286
GGGGGGGATATAGCTCAGTTGGTAGAGCTCTGCTCTTGCAATTGGGTCGTTGCGATTACGAGTTGGCTGTCTAATTGTCCAGGCTTCCCTCATCTGGGAT
CCCTAGGGAAGAGGATCAAGTTGGCCCTTGCAAATAGCTTGATGCACTATCTCTTTTCAACCTTTTGAGTGAAATATGGCAAAAGGAAGAAAAATCCATG
GACCGACGACATTGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACACCTTCGGCGTCCAGGGATCATGGACCGACCATAGACCCTATTCAATA
AGTGGAACACATTAGCCATCTGCTCTCCAGTTGGGCAGTAAGGGTCAGAGAAGTACAATCACTCGTTCTTAAAACCAGCATTCTTAAGTTAAGATCAAAG
AGTCGGGTGAAAAAAGGGGAGAGCTCCCTGTTCTTGGTTCTC