Detailed information on CNT30575110


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696681Oryza barthiiOryza sativa31.13101.0793.64283reverse complement
CNT30552671Oryza barthiiOryza glaberrima40.5965.89100369forward
CNT308584Oryza barthiiZea mays6.1627.8698.2156forward
CNT30105774Oryza barthiiOryza longistaminata79.8742.2397.93726forward

Expression of CNT30575110

Peptides detected in this lncRNA

>peptide 1 (32 aa)
HEDWMEVEDEDGKGMEILKTGKKKGVLFGCKK*

>peptide 2 (35 aa)
MQEVKNQPCSSIKVEKQRVQRKKELLNRKKKNLRG*

>peptide 3 (29 aa)
MIFLRSLNLTVDWDGMWLWCSWGGVEASL*

>peptide 4 (75 aa)
MRKNLYAQELLFRSNKPERSTFLGQDLSCVLPASKKIREVQRTNLLLLVADDFSQIAQPHRGLGWDVALVFLGWG*

>peptide 5 (45 aa)
MGCGFGVLGVGLRRLSEEEEASHHGLYIAPLWPCKQRNATEGHGR*

Sequence

>CNT30575110
CATGAGGACTGGATGGAGGTAGAAGATGAAGATGGCAAGGGTATGGAAATCTTAAAAACAGGAAAGAAAAAAGGGGTGCTTTTTGGATGCAAGAAGTGAA
AAATCAGCCCTGTTCCTCAATAAAAGTAGAGAAACAAAGGGTGCAAAGAAAGAAAGAGCTTTTGAATAGAAAGAAGAAAAATTTGAGAGGATGAACTAGA
AGGGTATTGCAAAACAACCCTTTCTGGCCTTAGAAAAGCAAAGGAAGCCTAAAAATCGGCAAGAATCCAGAAGAGAAAAAAGGTTCTCTGGATCTCTGTT
CCTCCTAGGAGAAGTTGATGGGATGAGAAAGAACCTGTACGCACAAGAACTCCTCTTTCGATCTAATAAACCCGAAAGAAGTACCTTCTTGGGACAGGAC
CTTTCTTGTGTGTTACCTGCTTCTAAAAAGATCAGAGAAGTTCAGAGAACAAACCTGTTGCTGCTCGTCGCTGATGATTTTTCTCAGATCGCTCAACCTC
ACCGTGGACTGGGATGGGATGTGGCTTTGGTGTTCTTGGGGTGGGGTTGAGGCGTCTCTCTGAGGAAGAAGAGGCCTCACACCATGGCCTTTATATAGCG
CCACTTTGGCCGTGCAAGCAACGCAACGCAACGGAAGGCCACGGCAGGTAGCACGCGGGGGTAACAAGTTGCAGCCAGTGAGGATGCCCCACGTGTGCTC
AGGACAGGGGTGTGCACGTCGCCACACTGTGTTTTGCTTACGTGGCGTCCTGTAGTTGGTTGATGGACTGATGGTGGGCTGGATTGACTTCAAATTTTGC
TGCCCTTTGTCCAGGGGAATTCGCCTTTTGGATTGCGCCAAGGGCTAAAAGCCTTCTCCATCTGAGGCCATTACAGTTTTGAAAAGTATTCAATGACTGG
CATTTACTC