Detailed information on CNT30552671


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696681Oryza glaberrimaOryza sativa50.36100.7193.62282reverse complement
CNT308584Oryza glaberrimaZea mays1027.8698.2156forward
CNT30105774Oryza glaberrimaOryza longistaminata65.8921.4799.73369forward
CNT30575110Oryza glaberrimaOryza barthii65.8940.59100369forward

Expression of CNT30552671

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MRKNLYAQELLFRSNKPERSTFLGQDLSCVLPASKKIREVQRTNLLLLVADDFSQIAQPHRGLGWDVALVFLGWG*

>peptide 2 (64 aa)
HEDWMEVEDEDGKGMEILKNRKEKRGAFWMQEVKNQPCSSIKVEKQRVQRKKELLNRKKKNLRG*

Sequence

>CNT30552671
CCATGAGGACTGGATGGAGGTAGAAGATGAAGATGGCAAGGGTATGGAAATCTTAAAAAACAGGAAAGAAAAAAGGGGTGCTTTTTGGATGCAAGAAGTG
AAAAATCAGCCCTGTTCCTCAATAAAAGTAGAGAAACAAAGGGTGCAAAGAAAGAAAGAGCTTTTGAATAGAAAGAAGAAAAATTTGAGAGGATGAACTA
GAAGGGTATTGCAAAACAACCCTTTCTGGCCTTAGAAAAGCAAAGGAAGCCTAAAAATCGGCAAGAATCCAGAAGAGAAAAAAGGTTCTCTGGATCTCTG
TTCCTCCTAGGAGAAGTTGATGGGATGAGAAAGAACCTGTACGCACAAGAACTCCTCTTTCGATCTAATAAACCCGAAAGAAGTACCTTCTTGGGACAGG
ACCTTTCTTGTGTGTTACCTGCTTCTAAAAAGATCAGAGAAGTTCAGAGAACAAACCTGTTGCTGCTCGTCGCTGATGATTTTTCTCAGATCGCTCAACC
TCACCGTGGACTGGGATGGGATGTGGCTTTGGTGTTCTTGGGGTGGGGTTGAGGCGTCTC