Detailed information on CNT30572334


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZG8|MIK2_ARATH, E-value = 1e-114

BLAST vs NONCODE:
NONVVIT000516, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379441Vitis viniferaManihot esculenta19.8323.5279.08239forward
CNT30146611Vitis viniferaMedicago truncatula10.7130.6482.95129forward
CNT3026122Vitis viniferaPopulus trichocarpa14.3625.1584.97173forward

Expression of CNT30572334

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MFSLTFQSNFSASSSLLRMFRKLPFSINS*

>peptide 2 (66 aa)
MSDIISTQTFIIFECLKWSESFDVGERTFQLIVGYINNCQAYQIIKSVWDGAREPVMGEIQRFQVL*

>peptide 3 (31 aa)
MVPESPLWERFNVSRFCNSPSSGGTSPINIF*

>peptide 4 (31 aa)
MLSHNYFQCYHSEAINISFIINLHRVSNSCK*

>peptide 5 (32 aa)
MSEVFSQQQPGLLATQPCKQYHILQCRYTVSN*

>peptide 6 (37 aa)
MMCSYNNSPSWPHIANRSSTSASGDLVFLFLNFWKRK*

Sequence

>CNT30572334
TGAGGACGCTGACCATAACAGGGACGAGATGAGTTCTCCAGGATGCTTTCCCATAATTACTTCCAATGTTACCACTCCGAAGCTATAAACATCAGTTTTA
TTATCAACCTTCATCGTGTAAGCAATTCCTGCAAATGAAGTCCAATTAGATGAGTCCAACTTTAAAAGCCTAGCCGTGCCAAAGTCAGATACATGAGCCT
CATATTCTGAATCTAACAAAACATTGTTGCTCGATATGTCTCGATGAACTATAGGAGGTGAGCAATCATGGTGCATGTAAGATAAAGCTTTAGCCACGCC
TTTAACAATGTTTAGCCTCACATTCCAATCTAATTTTTCTGCTTCTTCGTCGTTGCTTAGAATGTTTCGCAAGCTCCCCTTTTCCATAAACTCATAAACC
AAAAATGAGATCTCTGCAAATGAACTGAAGCCATAAAGCTTGACGATGTTGCGATGCCTTATCTGTGTTAAAGCATGAATCTCGCTTTTGAAAGCTTTCA
AATCAGCCATATCTCCATCTTGTGATGAGTGAAGTTTTTTCACAGCAACAACCCGGCCTGTTGGCAACTCAGCCTTGTAAACAGTACCATATCCTCCAGT
GCCGATACACTGTTTCGAACTGAAATTATCGGTCCCCTGTATGATGTGCTCATACAACAATTCTCCATCATGGCCCCATATTGCAAATAGATCTTCAACA
TCTGCTTCTGGAGACTTGGTTTTTCTCTTCCTCAATTTTTGGAAAAGAAAATAAATGCCAATAATAAAAGAAAATAAGAGCAATAGAGTGCTCACAATGA
GGAGCACCATGATCAAAACATAAAACTTGTTGGGCCTCTTTCGACTAGCACTGCATGGCTTGAGATGAGTGACATTATTTCCACACAGACCTTTATTATT
TTTGAATGCCTCAAATGGAGTGAAAGCTTTGATGTTGGGGAGAGGACCTTCCAACTGATTGTAGGATATATCAACAACTGTCAGGCTTATCAGATCATCA
AAAGTGTGTGGGATGGTGCCAGAGAGCCCGTTATGGGAGAGATTCAACGTTTCCAGGTTCTGTAATTCTCCAAGCAGTGGTGGAACCTCTCCTATCAACA
TATTTTGACTAAGATCGAGACTTTCAAGATGATACACCATTCCAATTTCGTCAGGAATGCTATCCACAAATCTATTCTCACTCAAGTTGAAGGACCGTAA
TTTCC