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Detailed information on CNT30379441


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZG8|MIK2_ARATH, E-value = 9e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30572334Manihot esculentaVitis vinifera23.5219.8379.08239forward

Expression of CNT30379441

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MDVFPLLTPVLSLQNYRHHIFHSLALCRLVL*

>peptide 2 (38 aa)
STSIILYKLTNLFKCWQYCCKVVLLILLWRMTLKSEDA*

>peptide 3 (60 aa)
MSHRFDNETKRHVPGAVYPKVPANEALLEESDNKSLAVPKSDIRGSYSESKRILLLEMSR*

>peptide 4 (29 aa)
MKLKGTYQELCIQRSQQMRLCWKSPTIKA*

Sequence

>CNT30379441
GCTCTACATCTATAATTCTATACAAACTTACAAATTTATTCAAATGTTGGCAATATTGTTGTAAAGTAGTTCTTCTAATTTTATTGTGGAGAATGACTTT
GAAATCAGAGGATGCTTAGATGTCAACTTTGAAGAAATTTGTTGCATTGTTGGCCGAGATTTGGGATTGAGATGCAAGCATGAAAATGCTAACATGGTAA
TGTAGACTACACTCTCTGCAACTTGATTTTGAGGAAGTAGAAGACGCTGGTCTATCACATCCTTCAACAATTTATCATGATCATCTGATGATGACAATGA
CGACGAAGATATCGATGACCAAAGAGATGAGATGAGGTTGCATGGATGTGTTCCCATTACTAACTCCAGTGTTATCACTCCAAAACTATAGACATCACAT
TTTTCATTCACTTGCATTGTGTAGGCTAGTTCTGTAAAAAAATGATGAGATAAATATGCTAGACTTCTCTTTATTAATGATGCAGTCATGAGCCACAGAT
TTGATAATGAAACTAAAAGGCACGTACCAGGAGCTGTGTATCCAAAGGTCCCAGCAAATGAGGCTTTGTTGGAAGAGTCCGACAATAAAAGCCTAGCTGT
ACCAAAATCAGATATACGAGGTTCGTATTCTGAATCCAAAAGAATATTGTTGCTTGAAATGTCTCGATGAATGATCGGAAAAGGGCAGTTATGGTGCATA
TAAGATAAAGCATTAGCTACACCTTTGACAATATTCTGCCTTTTAATCCAATCCAATTCTGCTGCTTCCTCATCACTGTTTAAAATGCTTCTCAAGCTAC
CCTTTTCCACGAACTCGTAAACCAGAAAAGAGTCTTTTGAATGTGAACAAAAACCATGTAGCTTCACAATATTGCGATGCCGAATTTCTAACAGCACTTG
AATCTCTCTTTCAAAGGCTTTCAAGTTCTTTGACTTGTCAGACTCCTGTAATGAATGAAGTTTTTTCACAGCAAACACTCGACCTGATGGCAGCACAGCT
TTATAAACAACTCCAC