CANTATAdb - search

Detailed information on CNT30571517

BLAST search results

BLAST vs Swiss-Prot:
sp|O49836|PAL2_LITER, E-value = 3e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3025025	Vitis vinifera	Populus trichocarpa	22.68	6.16	85.04	127	forward
CNT30113844	Vitis vinifera	Ficus carica	58.04	14.72	82.77	325	forward

Expression of CNT30571517

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MLSITQSLLAFTPSLAASDNSTVTSSSRPAIAATCDIVRVSPPSRTTGFRYSATMRFTSSKWLPFNSSAATPQFSGSLTQKLSTLLLPWLFIASMS*

>peptide 2 (38 aa)
MAPLQLLRSHSPVQRITHAETLDLVASVAVHCFHVLEE*

Sequence

>CNT30571517
ACCTAATAAGCTCCTTCTGAAGGGCACCACCTTCTTTGGTTCTCCTATGTGAAGTCGCACCAAATCCAGTGGTGACACCATAGCTGTCAGTACCCTTGTT
CATGCTCTCCATCACCCAGTCACTGCTCGCCTTCACGCCTTCTCTCGCCGCCTCCGACAACTCCACAGTCACATCCTCCTCCCGCCCGGCGATCGCCGCC
ACCTGCGATATCGTAAGAGTCTCACCACCCAGCCGAACCACCGGCTTCCGGTACTCCGCCACCATGCGCTTCACTTCATCCAAATGGCTCCCCTTCAACT
CCTCCGCAGCCACTCCCCAGTTCAGCGGATCACTCACGCAGAAACTCTCGACCTTGTTGCTTCCGTGGCTGTTCATTGCTTCCATGTCTTAGAAGAATAA
GCTGGTTTTTTTCACGACAACCAATAAGGAAAGAGAGAGAGAGAGGAACTAGAGGGTTGTGTAGAGAGGAAATCGGAGAGTTAGGCTCTGAAATTTCCTG
AGGTGTATGGTAACAGGCTTTTCCTTATATAGAGTGTTTGAGCCTTGGAGTCCTTAAAAT