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Detailed information on CNT30454234


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 1e-139

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520579Saccharum spontaneumSetaria italica44.7331.2997.58331forward
CNT30556099Saccharum spontaneumOryza glaberrima80.2760.9285.19594forward
CNT30243592Saccharum spontaneumAvena sativa58.1155.6390.23430forward
CNT30133578Saccharum spontaneumLolium perenne82.4366.3889.84610forward
CNT3013298Saccharum spontaneumZea mays58.1149.8397.21430forward
CNT30347916Saccharum spontaneumEragrostis tef22.5727.8392.81167forward
CNT30362471Saccharum spontaneumSorghum bicolor19.4632.5898.61144forward
CNT30575846Saccharum spontaneumOryza barthii77.0364.4885.09570forward
CNT30580752Saccharum spontaneumEchinochloa crusgalli82.9776.5695.44614forward
CNT30496441Saccharum spontaneumDigitaria exilis55.6850.6893.45412forward
CNT30116728Saccharum spontaneumOryza nivara79.5966.6385.06589forward
CNT30604338Saccharum spontaneumOryza punctata44.7348.9693.66331forward
CNT30556476Saccharum spontaneumPanicum hallii48.3849.3896.65358forward

Expression of CNT30454234

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MQPSAPSIAHRPWITSSALFRANASGSADSPAVSQP*

>peptide 2 (31 aa)
MRKPSTRPMRMTWNPSTARMLCACTRLGLPR*

>peptide 3 (32 aa)
MAWTKKPNMENMARRPFLISLTLSSAKYWPPG*

Sequence

>CNT30454234
AAACTAGTCCAGTACGTTTCTGAGTTCTGAGAGAGCACAAGGATATTTGCATTCGTTCATGGTACAAATGTAATGTCACAACACAAACGAGTAGTCTACA
ATGTCCCGGCACGCCGCCGTGTCCGGCTAGCTTAAGACCCTGGCGCGAACTTGGTGGCGTAGACCCAGGCGTTGTTGGCGACGGGGTCGTCGAGGTGGTC
GAGCAGGTTCTCGAGGGGCCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTGACC
TTGAGCTCGGCGAAGTACTGGCCGCCGGGGTAGAGGTTGTTGCCCTCGCCGACGCCGTCGAGGCCGTTGATGCGGAAGCCCTCGACGAGGCCCATGAGGA
TGACCTGGAACCCCAGCACGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCGAGGTAGTCCAGCCCGCCCTCGGAGAAGATCTGCGCGCCGGC
CTTGAACCACACGGGCTCCTTGAAGTCCACGCGCACCCACTTCTCGAGCACCTCCGGGGTGATGCAGCCCAGCGCCCCCAGCATCGCCCACCGCCCGTGG
ATCACCTCCAGCGCCCTGTTCCGCGCGAACGCCTCCGGGTCCGCCGACAGCCCGGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGG
ACGGCGTCTGCGCGGAGAAGGGGCCCAGGTACTTGACGCG