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Detailed information on CNT30556448


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7M0|CB3_ARATH, E-value = 2e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30454015Panicum halliiSaccharum spontaneum84.7962.5894.85485forward
CNT3013167Panicum halliiZea mays78.8558.3494.46451forward

Expression of CNT30556448

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MHPSAPSIAHRPWITSSALLRANASGSAESPAVS

>peptide 2 (55 aa)
MACTKNPNMENMARRPFLISLTLSSAKVTGSSARMTWNPSTARMLCACTRLGLPR*

Sequence

>CNT30556448
TACAATCCTGAATCGTGAGATGGCAATATTTGCATTCATTGGTGGTGGTACAATCGAGTAGTCTACAATGGTGGTCCGGCACGAAGAGGCCGCCGTCTAG
CTTAAGACCCGGGCGCGAACTTGGTGGCGTAGACCCAGGCGTTGTTGGCGACGGGGTCGTCGAGGTGGTCGAGCAGGTTCTCGAGGGGGCCCTTGCCGGT
GACGATGGCCTGCACGAAGAATCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTGACCTTGAGCTCGGCGAAGGTGACGGGGTCGTCG
GCGAGGATGACCTGGAATCCGAGCACGGCGAGGATGCTCTGCGCGTGCACCAGGTTGGGGTTGCCCAGGTAGTCGAGCCCGCCCTCGGAGAAGATCTGCG
CGCCGGCCTTGAACCAGACGGGCTCCTTGAAGTCCACGCGCACCCACTTCTCGAGCACCTCCGGGGTGATGCATCCCAGCGCGCCCAGCATCGCCCACCG
CCCGTGGATCACCTCCAGCGCCCTGTTGCGCGCGAACGCCTCCGGGTCGGCGGAGAGCCCGGCCGTGTCCCA