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Detailed information on CNT30555304


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001456, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691154Oryza glaberrimaOryza sativa12.2141.3598.26172forward
CNT3058266Oryza glaberrimaAmborella trichopoda6.5331.2990.2292reverse complement

Expression of CNT30555304

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MHRGRERTSYIPFLLNQETTRGFMVVSSIPIQ*

>peptide 2 (38 aa)
MLILVTLLVTWFFRLDFPPLIDHIYDTVNIPEYLQYLR*

>peptide 3 (40 aa)
MFGSESTFFVFVRTYLVVNWEIHLHRAPRTFGTSGGQAVL*

>peptide 4 (78 aa)
MVPHMSVPYIYIYNPSREWSYVNSRLMENNFHVRFREHFFRIRSNLLSSELGNSSSPSSAHLWYFRRASCFIVTSFLG*

Sequence

>CNT30555304
ATGGATTGTGAAATAAAGTTAAATTTGAGTTGTTTTGTTGATAGGTATAGGTATGAATCGAATTATTATAACTAGGTATATACTCACAATTTGAAAATTT
TGAAAAATTTGAGTGATTTTGTGCATTAGATACCATGGTGCCCGGGCACCATGGTGCCCCATATGAGTGTCCCATATATATATATATATAATCCAAGCCG
AGAGTGGAGTTACGTGAACAGCCGTCTGATGGAAAACAACTTTCATGTTCGGTTCAGAGAGCACTTTTTTCGTATTCGTTCGAACTTACTTAGTAGTGAA
TTGGGAAATTCATCTTCACCGAGCTCCGCGCACCTTTGGTACTTCAGGAGGGCAAGCTGTTTTATAGTGACTTCTTTCTTAGGGTAACACGAAAGTTGTC
CCTTTATTATGGGGATTTACCCATAAGGGAGATGCACAGAGGAAGAGAACGAACTTCATATATCCCTTTTTTACTCAATCAAGAAACAACGAGGGGTTTC
ATGGTCGTGAGCTCCATTCCAATTCAATAGACTCTCAGAATTATTCGCTCTATTATTGCCTCAGGATGTGATCGGGATTAAGCCGCGTGTCGATACCCGG
GGGGGCCAGACTCAAGGGATTCATTCTTTGTTGGCGAAACGATGGGGGGGGGGGAGGAAAGCACGCAAGTGGAGATGATCCCTCGGTTCGTCTGAGCCGG
ACCGGAGTCAAATACTTCGGATCCTGCATCTGCTTCAGTTGATTAGGTGCAAATGTGCCTTTTGGACCGATCGAATCTTAGGAGCTGGTAATCACTAATA
TGCTCATATTGGTGACGTTATTGGTAACATGGTTTTTTCGCTTGGATTTTCCTCCTTTGATAGATCATATTTATGATACAGTAAATATCCCTGAATATTT
ACAGTATCTTCGATAAAGTGCTAAGAAAAGAACAAGTAAACTAAGGGACGGCCGAGAACGATGTCCTTTCTTGTGCCTAATGCCTAAGCGGGAGCGCCCC
TCTGTCTGCTACCACCGGTTGAGATTTATGCCATAATCAAGGAGTGCCCAGAATGGTACAACGTTTGGATACCAGATTCAGAGACATTTCATTACTGTTC
GTGAGCCGGGCCGGGCCTTGATTCCTTTCATAAAGATGAAGGGACAGAGGTGACTCTCTGCAAGCAAGCGCACTAATAAACTGAGTAAGGTCAATGCACT
ACCCCATTTCTACTACCGAAAAAACCTAATTCAGCTCTACGTAAGATAGCAAAAGTACGGTTGAGCAATCGACATCATACCAAGCCCGCCAAGCGGGAGA
AGGGGCGAAGCGAGAACTCAGGAATGAGGCTCATATGACTCCACTCGTAGCGCATGTGCCATCAGATCCACTAGTCTCACTGTACCAGGAAGGTCGATTA
TTTGTGTCA