Detailed information on CNT30555224


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000581, E-value = 6e-116

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30187165Oryza glaberrimaSecale cereale10.8466.9894.37142forward
CNT30720167Oryza glaberrimaTriticum spelta20.5361.4294.05269forward

Expression of CNT30555224

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MPYLFNLSSPKKTPLSLRLNLSFAVDAKPATQWAGAATTWTPLFMLLPVLSRAEPEFFIRTSAGKV*

>peptide 2 (30 aa)
MIYIGIIYTSLYFRCLCIYFLIISRLSFFF*

>peptide 3 (37 aa)
MDFAFVLFFLDLRNSSYPRQLPTNTLPIRLCPLLNRE*

>peptide 4 (63 aa)
MDPIPVTNTHFYLLIEKKDLRHGLCLCSIFFRFEEFLISKAAPHKHPAHTTMPSLESRVDWAS*

>peptide 5 (64 aa)
MLNLLLSGRVQQLHGPLYLCCCQCFPGPSRNSLLERRQAKSEGRQLSPWPSSFSMKNKSTSQYL*

Sequence

>CNT30555224
ACAGCTTTCATGTTCGGTTCAGAGAGCACTTTTTTAGTTGAGAATAAATCATTCCCTTTTATGTGAATTCCCCAGCGGCGAATTAACAATTTGTGATGCC
CTATCTATTCAATCTCTCGAGCCCCAAGAAAACCCCCCTCTCCCTCAGACTCAATCTCTCTTTTGCAGTAGATGCTAAACCTGCTACTCAGTGGGCGGGT
GCAGCAACTACATGGACCCCTTTATTTATGTTGTTGCCAGTGCTTTCCCGGGCCGAGCCGGAATTCTTTATTAGAACGTCGGCAGGCAAAGTCTGAAGGA
AGGCAACTATCCCCTTGGCCTTCTTCCTTTTCGATGAAAAACAAATCAACATCTCAATATCTCTAAAAGTCCCCTTCGTCGAGCCGGAAAATCCCCCACC
CACCCCCACCCCCTTCGTCGAGCCTTTCCTTTAGTGGTAAGGGATATGCACTTTATCTGAACGTTTGCAGGCATTCCGGAATTCTCCTTTTTGGGCCCCG
GGTGAACATAGGCTCAAACATGATTGGAGGGGTCCTAGCTACACCATGCGTTCAATAAAAAAAAGCCTTTGGGAAGCTGCAGGGATTACAAAAAGAGGGT
GCTTTCCTGTGTTGCACTGAAAAAGGACAAAGGAGAAGACACTCTTCGACTTTATTTCTTCCTCCCGCGCCCGCCTAAGCCTGGCTCGGCCCGCGTTAGA
GGGGAAGATTAGCAAAGCGGAAAAAGACAGAGGGAGAGGGAGCTGCATCTTATTCTCTTCGCGAGAACTTCAGGATCGGAGAAGCATTCGGAAGGGGCGA
GGCCTTCATTTCGTTGGCAGAAGCAGAAACGATCCAATCCATTTGGGGCTTCGGGGAACCCAAAAACGAACTCTGTTTACTTTTTTCATAGATAGATGAT
ATATATAGGAATAATATATACATCCCTTTACTTTAGATGTCTATGTATCTATTTTTTAATCATCTCCCGATTATCTTTTTTTTTCTAGTTCGTACTGCTC
TTTCTCTCTAAATTGCATCAAAGAAAATAGAGAGAGAGCAGATGGATCCTATCCCTGTAACGAATACTCATTTCTATCTATTGATAGAAAAGAAAGATCT
TCGTCATGGACTTTGCCTTTGTTCTATTTTTTTTAGATTTGAGGAATTCCTCATATCCAAGGCAGCTCCCCACAAACACCCTGCCCATACGACTATGCCC
TCTCTTGAATCGAGAGTAGATTGGGCTTCATAGCTACATTCATTCTAAAGACGAATATTAGTCAATAGGCAGGCTTCTTCTTCTTCTTCTGCAACCATCC
TCGTCCTCCC