Detailed information on CNT30554484


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596220Oryza glaberrimaOryza meridionalis17.16100.1593.28655reverse complement
CNT30107015Oryza glaberrimaOryza longistaminata31.2276.6698.661192forward
CNT30576933Oryza glaberrimaOryza barthii47.2871.899.721805forward

Expression of CNT30554484

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MEERATLLGVQIWWRQGWTRCAACIAAAHGGATRCTARLARCNGVVAD*

>peptide 2 (43 aa)
MRRRGRSSRGRRGRSSVSSEEQGRAVWTGSKAHAQATAWVAAK*

>peptide 3 (60 aa)
MPPQSKTFCLIRFWFSQRFLMRMVLMSPPAFWQSLSTIDCHQHIHIQLLWSVQSSIIKQY*

>peptide 4 (60 aa)
MVAPRMDAVRGVHRCGARRRDSVHGAAGTVQRRGCRLMQGGAAQHSAHPAQHFVEHVVGM*

>peptide 5 (55 aa)
MVDSNSSLKDLVKQGRVPTILSKPPLQNVFSAHRGSRMAWFISIKLYFTNQFTNL*

>peptide 6 (55 aa)
MRLATARFFSYPRVSAPAPRTMDPHCTSGTTHHLEPAVRRVLALPGSQWVILHIG*

>peptide 7 (67 aa)
MGTLWTGGGTMDLSLGELGLHPKDTGGRIGKYSKLPERSLGYIGKQHELLVDTEAERWALSGGVRGR*

>peptide 8 (65 aa)
MRVAEVAVVPRLGRDRGGRVSCSRGRCGRGGSTRSGSAWPCAAAAETVRGGEGDERLGRMKQRWP*

>peptide 9 (33 aa)
TPQASTGVPRSRLHSLRHIFISIVPEWSTLTPL*

>peptide 10 (36 aa)
MSCWVGRARERWPKCKRILCITVARNLYIPIVIGIL*

>peptide 11 (33 aa)
MRELHQVGGGRAPVAKGGNRRRRRPMRRRRRWA*

>peptide 12 (32 aa)
MDGDEVGQDVDIATGGEAYKVSFTANLLSHSV*

>peptide 13 (33 aa)
MTRVRPHENFLSPPGLYPLEKCGRTLVVSCIAS*

Sequence

>CNT30554484
GTACTCCACAGGCATCGACTGGTGTACCTAGGTCCCGACTCCACAGTCTTCGACATATCTTCATCAGCATAGTTCCCGAATGGTCGACTCTAACTCCTCT
CTAAAAGATTTAGTTAAGCAGGGGCGAGTACCAACCATACTCAGCAAGCCACCACTACAGAATGTATTTAGTGCACACAGGGGTTCAAGAATGGCTTGGT
TTATTTCCATAAAGCTATATTTCACAAATCAGTTCACAAACCTATGACTTAGCAGTTTTAACTAAAAAACAATGTTAAGTTGAAGTTGTCATTAATCCGC
GAGGGTTCATCCACCTTCCCCAAGCCTCGCTTGGTCCGATTTACCCTCACATCCAGTTTTCCACATTTCCAACATCATCATGACCTTCCCGCCCATCGGG
CAAGGTCACACCACTTTCCTAATCTAAGCAAGATTAAAATCTATGAGGCTAATCAAGTGTAGTACAAGTCCCGGTGCTCAATAACCGCGAGCACGGCTAT
TCGAATAGATTTGATTTACTCACACTGCAGTGGATGTACGCTTTTAATCCCGCACTCCGCGGCTTGCCCAACACATGAGCCTAGTCCCAACACATGAGAC
TTGCCACGGCCCGGTTTTTCAGTTACCCTCGTGTTTCGGCACCCGCTCCTAGGACTATGGATCCCCATTGCACTTCCGGCACAACACACCACCTCGAGCC
GGCAGTGAGGAGAGTCCTGGCGCTCCCGGGATCACAATGGGTTATATTACATATAGGTTAGGTGTGTTTTAAGTTTTGCGGGCCTTAACCAAACGATCGA
TCCACTCGATCCTTTACCTCCAACGTCACCACTTCAGAACCACCATGACAAGGGTGCGGCCCCACGAGAATTTCCTTAGTCCACCGGGTCTATACCCACT
CGAGAAGTGCGGTCGTACTCTAGTCGTTTCCTGCATAGCTTCTTGACTCGATCCTTAACTGACCAGGGTCGGCGACTAGCCGTTTCCAGAACCACCCATA
TTCTATCCATGCCGCCCCAGTCGAAAACATTTTGTTTAATTAGATTTTGGTTTTCGCAAAGGTTTTTGATGCGGATGGTGCTCATGTCTCCACCCGCCTT
CTGGCAATCACTCTCGACGATTGACTGCCACCAACACATCCATATCCAACTATTATGGAGTGTACAATCGTCTATAATTAAACAATACTAAGCAATGTCA
ATAATTGACCACGCATAAATAATAGACTCAGGCAACAAGGATGGTTCACATACAAATTTAGGTACGCAATTTATAATTAGCATGCAACTTTATTTATAAA
CAAAACATTTATAAACTGGGTTCAATATGCTCAAGGAAGGGAGCGCAGTGACTTGCCTTGCTTTTAGAAACCGGTATCTTCAAGAAATCCACGTTTGACG
AATAACCGGAATATTCGATACGCAGTTAGTACGAGAAAACCAAATAACATTCTTCAATAAAAGTACCAAACAATTCAAACCGGTAATGCCATTGGATAGA
TCTCGATTTTAGAAGAATTCCGAAAGTTGAACGGAATCAATCGGAGTCACGGTTGGAAAGATATGAATCCCCAAATTTTATAGGATTTATAGATCAAGGG
GAGAAGGATACCCAAAATAGGATTCCTTTTATTTTGAAGGAAATATCCCCATGGGTACCCTCTGGACTGGAGGAGGTACAATGGACTTATCCTTGGGTGA
GCTTGGGCTTCATCCCAAGGATACAGGAGGTCGGATAGGGAAGTATAGCAAACTTCCAGAGAGAAGCTTGGGTTACATAGGGAAGCAACATGAACTTTTG
GTGGATACAGAAGCTGAAAGGTGGGCTCTGTCCGGGGGTGTAAGAGGGAGGTGAAATAGACTCACGTGAGGAGTCAACACTGTGGGCTCCACTGGTGGGT
CCCACGGTCCTTTTTCTCCTTTCTTTTCTCTCTTTCTCTCTCTTAACTACTCTCGGCTTCTCCTCCTCGCGGCTCTCTCTCTCGATTCTTCCTCCTCTTC
TCTCTGCTCTCTCACGCACGCCCCAGAGACGAAAGGCGCCGGCGATGGTGGGCTGCCGCAGGGCGCGCGCCGGGGAGGAGACCGGGGAGCTGGCGGCTTA
GGCCGGGCGGCGCGGCAGGAGGCAGCACCCCTGCCGGACCAGCGCATCCAAGCGCGCAGCTGGGGTGACGGCGCGGCACGGCGGCCAGGCGGGTGCGCGG
CCGGGAGGTGATGCAGAGAGGTGGCGTTGGCGGAGGAGGGAGATGAGGGAGCTGCACCAGGTAGGAGGTGGTCGGGCGCCGGTGGCGAAGGGAGGAAACC
GGCGGCGACGGCGGCCGATGCGACGGCGGCGCCGATGGGCGTGAGGAGGCCGCGGCTGGGGGCGCTCGTCCCGGTGCAGTGACGCGGCCACGCAAAAGGG
CCGGAGGTGGCGCCTGTGCGGGCCGATCTGGTCGCGCGCGGGCGGCGTTCCACCCGGAGCGGCGGCGACCCGGATCAAGGCGATGAGGGTGGCGGAGGTC
GCAGTGGTTCCTCGGCTGGGCAGAGACAGAGGCGGCCGTGTAAGCTGCTCGCGCGGCCGGTGTGGCCGTGGAGGCAGCACTCGCTCGGGGTCGGCCTGGC
CGTGCGCGGCGGCAGCGGAGACGGTGCGGGGAGGTGAAGGCGACGAGCGGCTTGGAAGGATGAAGCAGAGGTGGCCGTGACAAAGTTGACGGCGCGCAGG
GTCCGGGCCGCACGGCTTGGAGCGCACTCAAGGTGCTCGTCCGTGCGCCTCGGGCCGGCGCGAGCAGGATGATGGTGGCGGGGATCGAAGGGCGAGGATG
GAGGAGGAATGGTTGGGCATGGCAACTCTGGTAGCCATAGTTTTTGCTTGATTGTGGATGGCTTCGAGGATAAGGAATAGAGCGAGGCTTCGAGGATAAG
GAACGGCACAGTGGCGATGCGGCGGCGTGGACGCAGCTCACGCGGGCGGCGTGGACGCTCGTCTGTGAGCAGTGAAGAACAGGGACGAGCGGTGTGGACT
GGGAGTAAGGCGCACGCACAGGCGACGGCCTGGGTGGCGGCGAAGTGACCATCGGTCACTAGGCTGCCCCGGAGCACGTGTCGGCGGCGGATGGGATGGA
CGGCGATGAGGTGGGCCAGGATGTCGACATCGCCACAGGGGGGGAGGCTTACAAGGTAAGCTTCACTGCGAACTTGCTCTCCCATTCGGTGTGAACTCAG
TTCTTTCTTTCGGTGTGAGCCATCCTCACTGCTTCTTCGGTGTTTGGGGAGGGATTTGGTGGACTGGGTGCTTGCAGGAATGGAGGAACGAGCGACCTTG
CTCGGTGTACAGATATGGTGGCGCCAAGGATGGACGCGGTGCGCGGCGTGCATCGCTGCGGCGCACGGAGGCGCGACTCGGTGCACGGCGCGGCTGGCAC
GGTGCAACGGCGTGGTTGCCGACTGATGCAAGGCGGCGCGGCTCAGCACAGTGCTCACCCGGCTCAACATTTTGTCGAACACGTGGTGGGCATGTGAACC
TGGCTGGGAGGAGGAAGGAGGAAGGGCAGCTGGGCCAGCTGAGGTAAGGAAGGGGGTGGAAACAGACTTGGGCTGGAATGAGGGAAAGGGAGGCAGGATG
GACTTAGGCTGTGATGAGCTGTTGGGTTGGCAGAGCGAGAGAGAGGTGGCCCAAGTGTAAAAGGATACTTTGTATAACTGTAGCAAGGAATTTGTACATC
CCCATTGTAATTGGAATTTTGTAGATGGACCCCAAACATGTAATGGGAGTGTATAACTGTAATTGGACTGTATAATTGGACATTCGGCTTTGAGCTGGGA
TTGAAATATGGAATTGGG