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Detailed information on CNT30596220


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697923Oryza meridionalisOryza sativa24.3110.685.53159forward
CNT30554484Oryza meridionalisOryza glaberrima100.1517.1693.28655reverse complement
CNT30370799Oryza meridionalisOryza glumipatula22.4819.585.71147forward
CNT30107014Oryza meridionalisOryza longistaminata100.1537.2293.74655forward
CNT30103930Oryza meridionalisOryza rufipogon24.926.9485.89163forward
CNT30577922Oryza meridionalisOryza barthii24.018.885.99157forward
CNT30116682Oryza meridionalisOryza nivara23.2417.7286.84152forward
CNT30603871Oryza meridionalisOryza punctata24.013.9584.71157forward

Expression of CNT30596220

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MTEKPGRGKSHVLGLDSCVGQAAECGIKSVHPLQYA*

>peptide 2 (40 aa)
WVVLETASRRPWSIKDRVKKLCRKRSEYDRTSRVGIDPVD*

>peptide 3 (35 aa)
GWFWKRLVADPGQLRTELRSYAGNDQSTTALLEWV*

Sequence

>CNT30596220
TGGGTGGTTCTGGAAACGGCTAGTCGCCGACCCTGGTCAATTAAGGACCGAGTTAAGAAGCTATGCAGGAAACGATCAGAGTACGACCGCACTTCTCGAG
TGGGTATAGACCCGGTGGACTAAGTAAATTCTCGTAGGGCGGCACCCCTGTCATGGTGGTTCTGAAGTGGTGACGTGATAGAGGTGAAGGATCGAGTGGA
TCGATCGTTTGGATGCCGCAGCAAAACTTAAAACACACCTAACCTATATGTAATATAACCCATTGTGATCCCGGGAGCGCCAAGACTCTCCTCACTGCCG
GCTCGAGGTGGTGTGTTGTGCCGGGAGTGCAATGGGGATCCATAGTCCTTGGAGCGGGTGCTGAAACGCGAGAATGACTGAAAAACCGGGCCGTGGCAAG
TCTCATGTGTTGGGACTAGACTCATGTGTTGGGCAAGCTGCGGAGTGCGGGATTAAAAGCGTACATCCACTGCAGTATGCATAAATCAAATCTATTCGAA
TAGCTGTGCTCGCGGTTATTGAGCGCCGGAACTTGTACTACACTTGACTAGCCTCATAGATTTTAATCTTGCTCAGATAAGGAAAGTGGTGTGACCTTGC
CCGATGTGCGGGAAGGTTATGATGATGTTAAGAATGTGAAAAACTGGATGTGAG