Detailed information on CNT30107015


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554484Oryza longistaminataOryza glaberrima76.6631.2298.661192forward
CNT30596551Oryza longistaminataOryza meridionalis13.89100100216forward
CNT30576933Oryza longistaminataOryza barthii77.4947.9398.421205forward

Expression of CNT30107015

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MAVTKLRARRVRAARLGAHSRCSSVRLGPARAG*

>peptide 2 (32 aa)
MDGDEVGQDVDIATGGEAYKVSFTANLLSHSV*

>peptide 3 (30 aa)
HPRTESGVRMEGDKDGDRGAPRDGAHAEPD*

>peptide 4 (30 aa)
MTISTDSRNDAWHKNPCDAVRFQQYGRYRR*

>peptide 5 (36 aa)
MSCWVGRARERWPKCKRILCITVARNLYIPIVIGIL*

>peptide 6 (48 aa)
MEERATLLGVQIWWRQGWTRCAACIAAAHGGATRCTARLARCNGVVAD*

>peptide 7 (50 aa)
IRALRAVCGWRAIRMATEELHETVLTPSRIDRARGRSGCVRERQGRRQGR*

>peptide 8 (60 aa)
MVAPRMDAVRGVHRCGARRRDSVHGAAGTVQRRGCRLMQGGAAQHSAHPAQHFVEHVVGM*

Sequence

>CNT30107015
CATCCGCGCACTGAGAGCGGTGTGCGGATGGAGGGCGATAAGGATGGCGACAGAGGAGCTCCACGAGACGGTGCTCACGCCGAGCCGGATTGACCGAGCG
CGGGGCCGATCTGGCTGTGTACGTGAACGGCAAGGTCGGCGGCAAGGGAGGTGATGGCGATGAGTGGCTCGGGAGGGAAGCAGAGATGGCGGTGACGAAG
TTGAGGGCGCGCAGGGTCCGGGCCGCACGGCTTGGAGCGCACTCAAGGTGCTCGTCCGTGCGCCTCGGGCCGGCGCGAGCAGGATGATGGTGGCGGGGAT
CGAAGGGCGAGGATGGAGGAGGAATGGTTGGGCATGGCAACTCTGGTAGCCATAGTTTTTGCTTGATTGTGGATGGCTTCGAGGATAAGGAATAGAGCGA
GGCTTCGAGGATAAGGAACGGCACAGTGGCGACGCGGGCGGCGTGGACGCAGCTCACGCGGGCGGCGTGGACGCTCGTCTGTGAGCAGTGAAGAACAGGG
ACGAGCGGTGTGGACTGGGAGTAGCGGCGCACGCACAGGCGACGGCCTGGGTGGCGGCGAAGTGACCATCGGTCACTAGGCTTCCCCGGAGCACGTGTCG
GCGGCGGATGGGATGGACGGCGATGAGGTGGGCCAGGATGTCGACATCGCCACAGGGGGGGAGGCTTACAAGGTAAGCTTCACTGCGAACTTGCTCTCCC
ATTCGGTGTGAACTCAGTTCTTTCTTTCGGTGTGAGCCATCCTCACTGCTTCTTCGGTGTTTGGGGAGGGATTTGGTGGACTGGGTGCTTGCAGGAATGG
AGGAACGAGCGACCTTGCTCGGTGTACAGATATGGTGGCGCCAAGGATGGACGCGGTGCGCGGCGTGCATCGCTGCGGCGCACGGAGGCGCGACTCGGTG
CACGGCGCGGCTGGCACGGTGCAACGGCGTGGTTGCCGACTGATGCAAGGCGGCGCGGCTCAGCACAGTGCTCACCCGGCTCAACATTTTGTCGAACACG
TGGTGGGCATGTGAACCTGGCTGGGAGGAGGAAGGAGGAAGGGCAGCTGGGCCAGCTGAGGTAAGGAAGGGGGTGGAAACAGACTTGGGCTGGAATGAGG
GAAAGGGAGGCAGGATGGACTTAGGCTGTGATGAGCTGTTGGGTTGGCAGAGCGAGAGAGAGGTGGCCCAAGTGTAAAAGGATACTTTGTATAACTGTAG
CAAGGAATTTGTACATCCCCATTGTAATTGGAATTTTGTAGATGGACCCCAAACATGTAATGGGAGTGTATAACTGTAATTGGACTGTATAATTGGACAT
TCGGCTTTGAGCTGGGATTGAAATATGGAATTGGGGTTTGGAACTAAATAAGAACAGTTTAATTGGGGTATTTGAATGGGATTTGGTTTGGCCGCTCAGT
CGCCCAAGTATTTAACTTAGGTTTTCTTTGCGACCGCTTGAATGAAAAGATGACGATATCGACGGATTCTAGAAACGACGCTTGGCATAAAAATCCATGC
GACGCGGTAAGGTTTCAACAGTACGGACGATATAGACGATAGGTTTAGGAGCGGC