« Back to Ipomoea triloba search


Detailed information on CNT30548816


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378671Ipomoea trilobaArabidopsis thaliana14.853.5598.01151forward
CNT30569652Ipomoea trilobaActinidia chinensis31.0853.1998.11317forward

Expression of CNT30548816

Peptides detected in this lncRNA

>peptide 1 (49 aa)
LVRCFGRNQFPGCDGRCVQGPGTYSPRHADPRLLAIPTSCSRVAENNPN*

>peptide 2 (32 aa)
MPSLSLPSTRRRRHLQDKAKNLTLLNKKQSSK*

>peptide 3 (53 aa)
MLHRLCRPPSIPLSFGLATVLPRRSVSRVSWAPDPRRPRANTHRLRHGLPGYLI

Sequence

>CNT30548816
TTAGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCGCGGCATGCTGATCCGCGATTAC
TAGCGATTCCAACTTCATGTTCCCGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCAGATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTAA
TTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCACTGGCAGTCCTTAGTGAGT
GCGGCACGCACCTTTTTGTTTGTTTCGGAGCCGTTTTGGCGGGGCGTACTAAACCCACTACGTACCACACCACCGGGCGGCTCGCCTGAATGCCGAGTCT
TTCTCTGCCGTCAACTCGACGTCGTCGTCACCTGCAAGATAAGGCCAAAAACTTGACTTTACTAAACAAGAAACAAAGCAGTAAATGAAGCCCTTTCTTT
AGTCAAGCGCGCTAGCTGCAATCAAACTAAAGCGCTAACTAGAAAGTGCTTCGAAAGGCGCCGGCTACCTTCTTACTGACAGCACAGCTAGGTGCTGGCA
CTCAATTAGTAGCGCTGGCACGTCACTCGGCTCCTCGGCTCACTTCGGTTGCAAAGACTTTCTCCTTAGGCGCATGTCTCAGCAACACAAAACGAGGGTT
TCGCTCGTTATAGGACTTGACCAAACATCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGAAAGTAAGTACCATCCCGTTAAGGACAGGTT
TTCTTGTTCATATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGCTTGTGCAGGCCCCCGTCAATTCCTTTGAGT
TTCGGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTCACGCGTTAGCTGGGCCCCTGATCCGCGTAGACCAAGGGCGAACACTCATCGTTTACGGCATG
GACTACCAGGGTATCTAATC