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Detailed information on CNT30547615


BLAST search results

BLAST vs Swiss-Prot:
sp|P28551|TBB3_SOYBN, E-value = 5e-25

BLAST vs NONCODE:
NONGMAT000220, E-value = 7e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30359250Ipomoea trilobaLactuca sativa54.1548.9781.98333forward
CNT30575645Ipomoea trilobaOryza barthii99.3572.0584.94611forward

Expression of CNT30547615

Peptides detected in this lncRNA

>peptide 1 (65 aa)
HQSTNWMVRLVLMVATAAFTSLGTTSPRNIRQHAMYLPWRGSHLTIIDDGSKALLVISATESCSW*

>peptide 2 (37 aa)
MASLSRRTATSVCSRREWVDRTLLYGSTTEVETWGEG*

>peptide 3 (48 aa)
APIHKLDGTLGLDGSHSSVHVLGHHITTEHQAACHVFAVARVALDHHR*

Sequence

>CNT30547615
GGCACCAATCCACAAACTGGATGGTACGCTTGGTCTTGATGGTAGCCACAGCAGCGTTCACGTCCTTGGGCACCACATCACCACGGAACATCAGGCAGCA
TGCCATGTATTTGCCGTGGCGAGGGTCGCACTTGACCATCATAGATGATGGCTCAAAAGCACTGTTGGTGATCTCAGCAACAGAGAGTTGTTCATGGTAG
GCTTTCTCAGCTGATATGACAGGGGCATATGAGGAAAGCATGAAATGAATCCTTGGGTAGGGCACAAGGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCA
GATGTCATAAATGGCCTCATTGTCAAGAAGAACTGCCACATCAGTGTGCTCGAGAAGGGAATGGGTTGACAGGACACTGTTGTATGGCTCAACAACAGAG
GTTGAAACCTGGGGTGAAGGGTAAATGGTGAAACCAAGTTTTGATTTCTTTCCATAGTCAACAGAGAGACGCTCAAGCAGAAGAGATCCCAGGCCTGAAC
CAGTGCCTCCACCCACAGCATTGAAGACAAGAAATCCTTGAAGACCAGTGCAGTTGTCAGCAAGTTTACGGATCCTATCCAAGCAAAGATCAACAATCTC
CTTCCCAACTGCACA