CANTATAdb - search

Detailed information on CNT30538901

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 2e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30375313	Brassica napus	Arabidopsis thaliana	65.25	48.12	89.82	383	forward
CNT30479029	Brassica napus	Arabidopsis halleri	54.51	100	88.44	320	forward

Expression of CNT30538901

Peptides detected in this lncRNA

>peptide 1 (81 aa)
LLRGTLIDSLFHQSYCSSLQMSYQFLERSEKVNHLSSLHVSSTTDKTQQAQELCELCSRFPLLFQVLQEEVVVDHHQAKEV*

>peptide 2 (43 aa)
AKRNVDRFSISPIILLLASDELPVPGEIREGEPSFFASRFIND*

Sequence

>CNT30538901
CTGCTAAGAGGAACGTTGATCGATTCTCTATTTCACCAATCATATTGCTCCTCGCTTCAGATGAGCTACCAGTTCCTGGAGAGATCAGAGAAGGTGAACC
ATCTTTCTTCGCTTCACGTTTCATCAACGACTGATAAAACTCAACAAGCTCAGGAGCTCTGTGAACTTTGCTCCCGCTTCCCGCTCCTCTTCCAAGTGCT
CCAGGAGGAGGTGGTGGTGGACCACCACCAGGCAAAGGAGGTCTAGGGGAAGGCACATTAGTACTTTTACCACCTCCAGCTGATCTAGGAGGCGGGCGAG
GCACCCTAGGAGGACGTTTCTCAATATCCACAAGCTTCATTTTCGCCACGGCTTGCGCGTTTTCGCTGGCTTTACCATCGTTGCCGTCGCTAGACTGATC
ACTTGCGGTAACCGTCCTGGTCAAGGAGGGAACTGAAACTGGTTTCTCCTTGAGCTGAGCTAGTTTAGGAGGCAAAGCCACATTGCCTCCAAACCTCTCA
GCCCTCGCTTGATCTGCTTTATGCTTAATATGCTTCTCCCTCTCAACCGCAAGCTTATGCCTATCTTTATACGCAGGATACTTCTCG