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Detailed information on CNT30533597


BLAST search results

BLAST vs Swiss-Prot:
sp|Q42667|PALY_CITLI, E-value = 5e-162

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30254575Eucalyptus grandisAvena sativa22.6619.0687.68203forward
CNT30113881Eucalyptus grandisFicus carica48.4440.4179.49434forward

Expression of CNT30533597

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MGSGAPSQSLKHSSKGSISLPSHMAENTRSKSSPGEPTFSPVSKPVPSSSLTNLYNGYDLHPLILLAIAEFPLSN*

>peptide 2 (37 aa)
MEVLGFFSRSTSSSASSTRTCLSFCIRGYVALQGSSM*

>peptide 3 (70 aa)
MAWHRATRKVEDMSFSTSTASAVFLDEIRPKEFTSWLCCSALWTWLVTGLARNCSSEQYEAMAISAPLKP*

>peptide 4 (54 aa)
MRQSSGFGKVSNRWEAEHHPSPSSTPAKDRSACPRTWRRTPDQSPRPASRPSPP*

Sequence

>CNT30533597
GGGCAAGTTAAATTATGAGGCAGTCTTCAGGATTTGGAAAAGTTTCTAACAGATGGGAAGCGGAGCACCATCCCAGTCCCTCAAGCACTCCAGCAAAGGA
TCGATCAGCTTGCCCTCGCACATGGCGGAGAACACCAGATCAAAGTCCTCGCCCGGCGAGCCGACCTTCTCCCCCGTGAGCAAACCGGTCCCGAGCTCTT
CCCTCACGAACCTGTACAATGGGTACGACCTGCACCCCCTGATCTTGTTAGCGATCGCCGAGTTCCCGCTCTCGAACTGAGCTCTCGCGTTCTCGACCTC
CTTCGGGAGGAGTGCCTTGAGCTCCTCCTCGAAAGTCCCAATCTTCTGGAAGATGGAGGTGCTGGGGTTCTTCTCCCGGTCGACGTCGTCCAGCGCATCG
TCCACGAGGACCTGCCTCAGTTTCTGCATCAGGGGGTACGTGGCGCTGCAGGGGTCATCGATGTAGGCGAAGACGTACTCCCGGTCGACCACCTTGATCA
GGTCTTTCTCGCTGAACCGCGACGGGTGGAGCTCGCCGTTGGACCCGACGTAGAGGACCTTCTTGGCCACTTGGTTCACCGTGTTCTTGACCACGCTCTT
GAGGTTCTCTTCCAGGTGCCTCAGGTCGATGGCCTGGCACAGGGCGACCAGGAAGGTGGAGGACATGAGCTTCAGCACGTCGACGGCCTCGGCGGTCTTC
CTCGACGAGATCAGGCCCAAGGAGTTCACGTCCTGGTTGTGTTGCTCCGCGCTCTGGACATGGTTGGTCACAGGGTTGGCAAGAAACTGCAGCTCCGAGC
AGTATGAGGCCATGGCTATCTCAGCTCCCTTGAAGCCGTAATCCAAGCTTGGGTTCCGTCCCCCGGACAGGTTAGAGGGCAGCCCGTTGTTGTAGA