Detailed information on CNT30523122


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674467Setaria italicaSetaria viridis43.6245.05100123forward
CNT30222969Setaria italicaHordeum vulgare30.1430.2588.2485forward
CNT30347449Setaria italicaEragrostis tef37.9436.7791.59107forward

Expression of CNT30523122

Peptides detected in this lncRNA

>peptide 1 (92 aa)
RRRDDGGRREGRGGDAEPLLEVVDEAAGLLEREPGDGVPELQDLGGLCGGGRDSDGAAEERVVDAMGTCSGSSGLGSEQRRREEAGDKKMRRW

>peptide 2 (90 aa)
PGAATTAAGAKAAAVTPSRSWRWSTRLRASSSVSPAMASPSSRTLGDSVAVDATATARRRRGWWTPWGLARGARASGVSSGGGRRRGIRR*

Sequence

>CNT30523122
CCAGGCGCCGCGACGACGGCGGCCGGCGCGAAGGCCGCGGCGGTGACGCCGAGCCGCTCCTGGAGGTGGTCGACGAGGCTGCGGGCCTCCTCGAGCGTGA
GCCCGGCGATGGCGTCCCCGAGCTCCAGGACCTTGGGGGACTCTGTGGCGGTGGACGCGACAGCGACGGCGCGGCGGAGGAGAGGGTGGTGGACGCCATG
GGGACTTGCTCGGGGAGCTCGGGCCTCGGGAGTGAGCAGCGGCGGCGGGAGGAGGCGGGGGATAAGAAGATGAGGCGATGGG