Detailed information on CNT30347449


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674467Eragrostis tefSetaria viridis24.7426.3791.6772forward
CNT30523122Eragrostis tefSetaria italica24.7425.5391.6772forward

Expression of CNT30347449

Peptides detected in this lncRNA

>peptide 1 (85 aa)
RRGCVPPRASARRWHPRAPRSWGTRWRWTRRRWRGGRGGAARRRRTSRARREKVEERVVEAIGTCWELRAGSESKCGSGREGGEG*

>peptide 2 (95 aa)
DEGACLLERQPGDGIPELHDLGGLGGGGRDGDGAAAAAERHGDGGPRGRGGRRWRRGWWRPLGLAGSFAPGVRASAAAGGREGRDKKMRKRIGVPL

>peptide 3 (71 aa)
TRVRASSSVSPAMASPSSTILGDSVAVDATAMARRPRRSGTATEDLAGEEGEGGGEGGGGHWDLLGASRRE*

Sequence

>CNT30347449
CGACGAGGGTGCGTGCCTCCTCGAGCGTCAGCCCGGCGATGGCATCCCCGAGCTCCACGATCTTGGGGGACTCGGTGGCGGTGGACGCGACGGCGATGGC
GCGGCGGCCGCGGCGGAGCGGCACGGCGACGGAGGACCTCGCGGGCGAGGAGGGAGAAGGTGGAGGAGAGGGTGGTGGAGGCCATTGGGACTTGCTGGGA
GCTTCGCGCCGGGAGTGAGAGCAAGTGCGGCAGCGGGAGGGAGGGAGGGGAGGGATAAGAAGATGAGGAAACGGATTGGGGTGCCGTTGCG