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Detailed information on CNT30521093


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371709Setaria italicaArabidopsis thaliana57.3999.5388.61641forward
CNT30541587Setaria italicaBrassica napus76.8172.9686.48858forward

Expression of CNT30521093

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MMMTWEVKLAASLAGSSLELEATNPRLRSFTATFFTLNPTLSPGRASWRASWCISTDFTSVVRPVGPKVTSIPGLMIPVSTRPTGTVPIPPILYTS*

>peptide 2 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

>peptide 3 (33 aa)
KLNDTQALALNNRRSTSISGNLSFAKSKYKNCM*

Sequence

>CNT30521093
AAACTTAATGACACCCAGGCACTTGCATTGAACAATCGCAGGAGCACATCAATCTCAGGTAATTTAAGTTTTGCCAAATCCAAATATAAAAACTGTATGT
AAACATCAAACAGACCGAGGACACATTGCCAGCTGAGATTAATAGTTCACGAGATAACAGCAATGGCCATAGACAAAACTTAAGTGATATTATAGCATCT
AGGCATGCCAAAAGCAGAAGTGGAATCAACCACCAGACACATCATTTCTTCTTGGCTGCAGCCTTAGTCACCTTGGCGCCCGTTGGGTCCTTCTTCTCCA
CGCTCTTGATGACTCCAACAGCAACCGTTTGCCTCATGTCACGGACAGCAAAACGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACCACCATGGGCTT
GGTGGGAATCATCTTCACCATACCAGCATCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCGGATCGTCTGTCGATCTTGGTAATGAGC
TCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCGTTGCCGATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGG
TGAAGCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACGAACCCACGCTTGAGATCCTTCACAGCAACGTTCTTCACGTTGAACCCAAC
GTTGTCACCAGGAAGGGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACTGACTTCACCTCAGTAGTCAGGCCAGTGGGACCAAAGGTGACAAGCATACCA
GGCTTGATGATACCGGTCTCAACACGGCCAACAGGGACGGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGAAGACGGAGGGGCTTGTCCGAAG
GCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGCAGGGTTGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAA
ACCGGAGATGGGGACGAAGGCAATCTTGTCAGGGTTGTAACCCACCTTCTTCAGGTAGGAGGAGACTTCCTTCACAATCTCATCATAACGGGCCTTGGAG
TACTTGGGAGTGGTGGC