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Detailed information on CNT30520941


BLAST search results

BLAST vs Swiss-Prot:
sp|O64937|EF1A_ORYSJ, E-value = 0.0

BLAST vs NONCODE:
NONBNAT001751, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535563Setaria italicaEucalyptus grandis69.495.5987.56780forward
CNT30496962Setaria italicaDigitaria exilis95.3795.3793.281072forward

Expression of CNT30520941

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MTPTATVCLMSRTAKRPRGGYSEKVSTTMGLVGIIFTIPASPFFRNLGSFSSSLPDRLSILVMSSANLTAMWEVWQSSTGA*

>peptide 2 (96 aa)
MMMTWEVKLAASLAGSSLELEATNPRLRSFTATFFTLNPTLSPGRASWRASWCISTDFTSVVRPVGPKVTSIPGLMIPVSTRPTGTVPIPPILYTS*

>peptide 3 (33 aa)
KLNDTQALALNNRRSTSISGNLSFAKSKYKNCM*

Sequence

>CNT30520941
AAACTTAATGACACCCAGGCACTTGCATTGAACAATCGCAGGAGCACATCAATCTCAGGTAATTTAAGTTTTGCCAAATCCAAATATAAAAACTGTATGT
AAACATCAAACAGACCGAGGACACATTGCCAGCTGAGATTAATAGTTCACGAGATAACAGCAATGGCCATAGACAAAACTTAAGTGATATTATAGCATCT
AGGCATGCCAAAAGCAGAAGTGGAATCAACCACCAGACACATCATTTCTTCTTGGCTGCAGCCTTAGTCACCTTGGCGCCCGTTGGGTCCTTCTTCTCCA
CGCTCTTGATGACTCCAACAGCAACCGTTTGCCTCATGTCACGGACAGCAAAACGACCAAGAGGAGGGTACTCAGAGAAGGTCTCCACCACCATGGGCTT
GGTGGGAATCATCTTCACCATACCAGCATCACCATTCTTCAGGAACTTGGGCTCCTTCTCAAGCTCCTTACCGGATCGTCTGTCGATCTTGGTAATGAGC
TCAGCAAACTTGACAGCAATGTGGGAGGTGTGGCAGTCCAGCACTGGGGCGTAGCCATTGCCGATCTGCCCAGGGTGGTTCATGATGATGACCTGGGAGG
TGAAGCTGGCAGCCTCCTTGGCAGGGTCATCCTTGGAGTTGGAGGCCACAAACCCACGCTTGAGATCCTTCACAGCAACGTTCTTCACGTTGAACCCAAC
GTTGTCACCAGGAAGGGCCTCCTGGAGAGCCTCGTGGTGCATCTCAACTGACTTCACCTCAGTAGTCAGGCCAGTGGGACCAAAGGTGACAAGCATACCA
GGCTTGATGATACCGGTCTCAACACGGCCAACAGGGACGGTTCCAATACCACCAATCTTGTACACATCCTGAAGGGGAAGACGGAGGGGCTTGTCCGAAG
GCCTCTTGGGCTCGTTGATCTGGTCAAGAGCCTCAAGCAGGGTTGGGCCCTTGTACCAGTCAAGGTTGGTGGACCTCTCAATCATGTTGTCACCCTCAAA
ACCGGAGATGGGGACGAAGGCAATCTTGTCAGGGTTGTAACCCACCTTCTTCAGGTAGGAGGAGACTTCCTTCACAATCTCATCATAACGGGCCTTGGAG
TACTTGGGAGTGGTGGCGTCCATC