Detailed information on CNT30520490


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4A7|APR1_ORYSJ, E-value = 5e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671722Setaria italicaSetaria viridis26.0839.44100127forward
CNT30273403Setaria italicaChenopodium quinoa23.826.0783.62116forward

Expression of CNT30520490

Peptides detected in this lncRNA

>peptide 1 (57 aa)
PSLCSYRPQFPLSDTSPPSLSTMLDGPTTPIANTTTMDRHRQRTMTLAPWRPLTGGC*

>peptide 2 (87 aa)
MGSRSRSGSGTPRRGSRRCPGRPPSRCRWRTWAPPPARPFRCCPCEGRTPWPWRPPTTTGLHARAAPAGPAWCTARNQLTRNPEEHIG

Sequence

>CNT30520490
CCCTCCCTCTGTTCCTATCGTCCCCAATTCCCTCTCTCTGATACCTCTCCTCCCTCTCTAAGTACAATGCTAGACGGACCAACGACACCAATCGCCAACA
CCACCACCATGGACAGACACAGACAGAGAACGATGACTCTCGCTCCCTGGCGGCCTCTCACCGGAGGCTGTTGACGAAGGCGAGGAGCGAGTCGACGTCC
CTCTTCTCGGACGGGTACTTGATGGGTTCTCGATCCCGGTCCGGGTCAGGGACACCACGGCGGGGCTCTCGAAGATGTCCGGGGCGCCCGCCGAGCCGTT
GCCGTTGGCGGACTTGGGCGCCGCCGCCTGCCCGTCCTTTTCGATGTTGCCCTTGTGAAGGCCGCACTCCTTGGCCTTGGCGTCCTCCCACCACCACCGG
CCTTCACGCTCGTGCTGCCCCGGCAGGACCGGCCTGGTGCACGGCTCGCAACCAATTGACACGTAACCCTGAAGAACACATTGGATC