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Detailed information on CNT30511534


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H5N9|PIP21_ORYSJ, E-value = 5e-47

BLAST vs NONCODE:
NONSLYT003533, E-value = 4e-98

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3097560Solanum lycopersicumSolanum tuberosum29.1645.4495.77284forward
CNT30552699Solanum lycopersicumOryza glaberrima9.1422.6584.2789forward

Expression of CNT30511534

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MKAPINGPTQKIQCSSHALSPLKITAAPKLLAGLIPVPVIGIVAR*

Sequence

>CNT30511534
TATAATGTACATGAAATCAAGGAGAAATACAAAAAAAGATAACAAAGGGACAACTAGATAAAACCAAACATTACAAATAGATTTAACTTAAATACATCCA
AAGCAAACAAAACAAAAAAATAAATCAAAAGGATAGAATAGTCACACCTTTTTTTCCCCCATTTGAAATAACAAACTTTTTATTTACAAATTTCTCAAAT
TATTCCATCTTTTATCACGCATTGCTTCTGAATGAACCAAGAGCTTTAATTGCTCCGGCTCGGAGAATGTACTGGTGGTAGACAGCGGCGATGAAAGCTC
CGATAAATGGCCCGACCCAGAAAATCCAGTGTTCGTCCCACGCCTTATCACCGTTGAAAATCACAGCTGCCCCGAAACTCCTCGCCGGGTTGATTCCGGT
ACCGGTGATCGGAATAGTGGCAAGGTGAACCATGAATACGGCAAATCCAATGGGGAGTGGGGCCAAGACCTTTATTTAAGACGTAAAAAAAGGTAAAATA
ATTTTTAAAAAAATTATTCATAACCAATTTTTATTAAAAACTATATAAAAAAAACACGATAGATAACATAACAAAATAAATATTAAACAACAACAAAATT
TTAAAGTACTTCTTTTTTATCTTTAATGAGCTAATATATTATTATATACATATATTCACTTATTTTAAACATATGTTTTAATTTAAAAACTTCATATTAA
TTTAAATTTATTATATAATAATTTAGTGATATGATAGGTGTATATCTTTAATATCATTACAAACTAAGCAAAATCACTTCATTATATTGTATTTTCTAAA
GTGTTTTAGTTAGGTCACCTCCCACTTTAATAAATCAAGAAAAATAATTAGATTAATAATGGGTAGGCCACTTACTAATTAACACCACACAAAAAAATGC
TTCAAATATTAAAGATAAGATTTGTTTTTAGCCACATTATTGATTTTTAGTGGGGAAATTAATTAAAGTAAACC