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Detailed information on CNT30552699


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBRAT002539, E-value = 9e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640614Oryza glaberrimaNymphaea colorata23.6614.6284.9593forward
CNT30517286Oryza glaberrimaJuglans regia20.3614.8483.7580forward
CNT3020713Oryza glaberrimaCitrullus lanatus21.887.4484.8886forward
CNT30502187Oryza glaberrimaNicotiana attenuata25.452.7583100forward
CNT3044720Oryza glaberrimaPrunus dulcis27.2316.2482.24107forward
CNT30589490Oryza glaberrimaMusa acuminata25.4534.4884100forward
CNT30511534Oryza glaberrimaSolanum lycopersicum22.659.1484.2789forward
CNT30145515Oryza glaberrimaMedicago truncatula17.327.7685.2968forward
CNT30436604Oryza glaberrimaAegilops tauschii33.3316.2988.55131forward
CNT30613102Oryza glaberrimaArabis alpina26.9740.7782.08106forward
CNT30227873Oryza glaberrimaAnanas comosus26.2116.7587.38103forward
CNT30595656Oryza glaberrimaOryza meridionalis19.8523.3584.6278forward
CNT30704968Oryza glaberrimaPrunus avium28.7512.5382.3113forward
CNT30118191Oryza glaberrimaCitrus clementina22.658.5785.3989forward
CNT3038708Oryza glaberrimaCucumis melo26.467.9181.73104forward

Expression of CNT30552699

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MQDAKAEFVDLVLDRGLVLVVDNRGSQAPRRVNAGAGDGDGGQMDHEHRKSNWERSQH

>peptide 2 (83 aa)
KVLNKSHIIVTMIFKFTNSPYEYYIHAECEGKLTKLGSTSGKQHMADIVQRNGDHMHGYIVHNSAVESIHEAKCRMRRLNSLI*

Sequence

>CNT30552699
AAAGTACTTAATAAATCGCACATAATAGTAACTATGATCTTCAAATTCACAAATTCTCCATATGAATATTACATACATGCAGAATGTGAAGGAAAATTAA
CCAAACTTGGAAGCACCAGCGGGAAGCAACATATGGCGGACATAGTTCAAAGGAATGGAGACCATATGCATGGATACATAGTACATAATAGTGCAGTAGA
ATCTATCCACGAGGCGAAATGCAGGATGCGAAGGCTGAATTCGTTGATCTAGTGCTGGACCGAGGCCTTGTCCTTGTTGTAGATAACCGCGGCTCCCAAG
CTCCTCGCCGGGTTAATGCCGGTGCCGGTGATGGGGATGGTGGCCAGATGGACCATGAACACCGCAAATCCAATTGGGAGAGGAGCCAACACC