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Detailed information on CNT3097560


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8H5N9|PIP21_ORYSJ, E-value = 1e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30589490Solanum tuberosumMusa acuminata1225.8686.6775forward
CNT30511534Solanum tuberosumSolanum lycopersicum45.4429.1695.77284forward
CNT30355349Solanum tuberosumLactuca sativa20.3221.1787.4127forward
CNT30102464Solanum tuberosumOryza rufipogon21.445.2782.84134forward
CNT30604398Solanum tuberosumOryza punctata21.445.6784.33134forward

Expression of CNT3097560

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MKAPMNGPTQKIQCSSHALSPLKITAAPKLLAGLIPVPVIGIVAR*

>peptide 2 (52 aa)
SSMHITFRDRCDIANILSTNFSNPSNCSIFYQALLLNEPRALIAPARRMYWW*

>peptide 3 (78 aa)
MRVSGASFGVGGREDNIDQNKSTNNFSSQTNTLGVSWCHNINTTTISIVVCTLECLHKTYTTNCTQTLCYHVQYCPNQ*

Sequence

>CNT3097560
AGCTCGATGCACATAACATTTCGCGATAGATGTGACATAGCAAACATTTTATCTACAAATTTCTCAAATCCATCAAATTGTTCCATCTTTTATCAAGCAT
TGCTTCTGAATGAACCAAGAGCTTTAATTGCTCCAGCTCGGAGAATGTATTGGTGGTAGACCGCGGCGATGAAAGCTCCGATGAATGGCCCGACCCAGAA
AATCCAGTGTTCGTCCCACGCCTTGTCGCCGTTGAAAATCACGGCCGCCCCGAAACTCCTCGCCGGGTTGATTCCGGTACCGGTGATCGGAATAGTGGCA
AGGTGAACCATGAATACGGCGAATCCAATGGGAAGTGGGGCCAAGACCTTTATTTATCATAAAAAGGGAACATGAGAGTCTCTGGCGCTTCTTTTGGGGT
CGGTGGCAGAGAAGACAACATAGACCAAAACAAAAGTACCAATAATTTCAGCAGCCAAACCAACACCCTTGGTGTGTCCTGGTGCCATAACATTAACACC
ACCACCATATCTATTGTAGTATGCACTTTGGAATGCCTTCACAAAACCTACACCACAAATTGCACCCAAACATTGTGCTACCATGTACAATACTGCCCTA
ATCAATGACACTTTCCTTGCCAAAA