« Back to Nicotiana attenuata search


Detailed information on CNT30503966


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618331Nicotiana attenuataSesamum indicum21.749.587.580forward
CNT30562195Nicotiana attenuataActinidia chinensis22.019.9685.1981forward
CNT3050792Nicotiana attenuataCucumis sativus22.018.1283.9581forward

Expression of CNT30503966

Peptides detected in this lncRNA

>peptide 1 (38 aa)
KFKEEASNSGSKQLCNNVENPTEQSDVSTNESTEGMGY*

>peptide 2 (48 aa)
MNSAKAALSVPDWRSSSWLPTEISLIGMAGKIGSGNRENENFLVLQSH*

>peptide 3 (37 aa)
MFPPTKAPKAWAIEAEIRPAGVAAPSADSLLKAIPEP*

Sequence

>CNT30503966
GCAAATTCAAGGAGGAAGCAAGCAACAGTGGATCCAAGCAACTGTGCAACAATGTAGAGAATCCCACGGAACAAAGTGATGTTTCCACCAACGAAAGCAC
CGAAGGCATGGGCTATTGAGGCAGAGATTAGGCCGGCAGGAGTAGCGGCGCCGTCAGCTGATAGCTTGTTGAAAGCCATACCAGAACCCTGACCTGCGAA
CACGAAGATCAAGGTACAGATGAACTCCGCCAAGGCCGCCTTGAGCGTCCCTGATTGGCGGAGTTCCTCATGGCTTCCAACGGAAATTTCGTTGATCGGC
ATGGCCGGAAAAATTGGATCTGGAAATAGAGAAAATGAAAATTTTCTAGTGCTACAAAGTCACTAAAG