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Detailed information on CNT30482488


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30440472Chara brauniiAegilops tauschii34.936.1382.79215forward
CNT30360516Chara brauniiLactuca sativa14.4530.5883.1589forward

Expression of CNT30482488

Peptides detected in this lncRNA

>peptide 1 (31 aa)
LSNTPASAVPPAAKTPLAKPPSSAAKAAAST*

>peptide 2 (44 aa)
MMITWEVKLAASLAGSFFESDATKPLFNSFTLTFFTLNPTLSPGR

>peptide 3 (39 aa)
YRILPRPLSLQLPKRRWRNHHHQLLKLLPLRESENTIIT*

Sequence

>CNT30482488
CTATCGAATACTCCCGCGTCCGCTGTCCCTCCAGCTGCCAAAACGCCGCTGGCGAAACCACCATCATCAGCTGCTAAAGCTGCTGCCTCTACGTGAATCA
GAAAATACTATTATTACGTAATTACGGCACTCAGATGCCGGGATCTTTCCCGGCAGCAGAAACAGGTCGGAATCCCGCGCACCGATTCATCCACATGAAA
AGGACAAGCTAAAAAAAAAAAAAAAGACAGGCTACCAGTTCACTTCCCTCCCTTCTTCATGGCGGATACTGAGCGAAGGTCTCAACACACATCGGCTTCG
TTGGCACCATTTTGACGAACCCAGCGTCTCCGTTCTTCAGGAACTTAGGCTCCTTCTCGATCTCCTTGCCCGTTCGCCGATCGATCTTCACCACCAGCTC
GGCGAACTTCACCGCGATGTGGCACGTGTGGCAATCCAGGACCGGCGCATAGCCATTACCGATCTGCCCAGGGTGATTCATGATGATAACCTGGGAGGTG
AAGCTGGCCGCCTCCTTAGCGGGGTCGTTTTTCGAGTCAGACGCCACGAAGCCTCTCTTCAACTCCTTCACGCTCACGTTCTTCACGTTGAACCCCACGT
TGTCCCCGGGGAGAGC